| Id Trinity | TRINITY_DN47197_c3_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_310684 |
| Sequence | CTCATATCAACTGTTATCATTTTAGATCGTCATACGATTCCATGTGACCGAATGTACCATGGTAGCGCCAACCAAGGGAGAAGTTTCTGGAACATAGAAA ACGTGGTTACAAATATTCACCAATTTCACGCTCAAATATCAAAGCTTTTCTCTTTATCCTCCATAATAACAAAATCATCGTTGCAAAAATTGTGAAGCTG ATTAATAATCGTAAAAAAGATGAGGGGTAGAAGCTACAGTTACAGTCCTTCACCATCTCCAAGGAGGTACAGCCGAAGAGGGCGGAGTCCAAGCCCAAGG GGACGTTATCGCGGCCGTGATAGGGATTTACCAACAAGTCTACTTGTTCGGAATCTCCATAAAGATTGCAGGTCTGTTTGTTATTGATTATGTTACTTTC AGCTTTCAATTCTTTTAACTTTGGTTTTGAAATTCCAGTATTACGAATTTTCTGTTTTTCCTTATGTTTATTTGATTCCTTTATCGGCATTCCTATACTA TTTTAGATGCATGATTTACAATTTTATAGTTAGATGAATATGTTACAGTAAATAAACTTTAATATTTTATGTTAATCAGGGTTTTAAATCTAGCCTATGA CCACCATAGGTAACCACATTAATATTTTTGACATGGATGCCCTTTGATGCGGCCCGATGCAGTTGTATTGCGGCCCAATACGGTTCAAATGTGGTTCATG CGGTTGCGTTGCGGCCTGTTGCAGTTGCATCATTGTGATTCGGTATCACACCGCAATTGCGGTGTGACGCGGTTGCAGCTGTCACCGCAACTGCAATATT GCGGCCGCATCACGTGATGCGGTCCGCAATTTAAAACACTGGGTAATGATATAGGTTTTAGGACTTGGCGAAATTGCATTGCCATCGCAATTGTGTTTGC AAATGCTTGCAATTGTCGGAATTGTCAATGTTTTTGAAGTTTCCGAAACAAATTCCATAATAGTTATTTAAAACATTGATGTTAACAATGGATCTTGCTG AAATCTGAAATATTAAATATAAGCTTTGTGTTTTAATGTTTGTCTTCAGTTAATGAAACACTTTTGATTTTTACTGTGATATTGACAGGGCGGAAGATTT AAGGGCTCCATTTAGCCACTTTGGTCCTCTGAAGGATGTTTATCTGCCTCGAGATTATTATACTGGGTAAGTGTGTTTTTGTCACTGAAAAATAGTTGCT AATGTTCTGAAAGATTTGCAGCTATTCCTTACCCTCTCTAAACTGTTTGTGTCCTGATTTTATTTAAGCATTTTTTTATTGTATTTTTAAGTGTGGGATT GTATCAAGTATTTCGTCGCATGATTTGGTGAAATTTGTTGGTGACTTTTGCCTGAGTATTCAGTTTTGAAACTCTTTTCTCAATAATAATAAGAATAATA ATAATTAATTCTCAAATAATTTTTTGGAAATTTGATTGTTTTATTGAAAGAGTTGAAGAGAAGAAAGAAGTAATAAGAATGTTGTCATGAAGAGAAGAAT GAAGTAATAAGAGTTCTTCTGTTCAAGGTGATGTTAGTGTATTGAAGAATCGGAAAGTTGAGTTTGAATTCATTGTGAAGAAGTTCAAGTCATGAAGACT TTCATCTCAATTAATACCTTGACTTCTACAAGGTTAGCATCCATGTGGTGTTTATTGTTGAATTATATCGAGTGTTGAGAGCGTCACTTATTATAGTTTG GAGTCAGGATCATATTTGCAGATATGTGAAATCAACCCACCTTCCGGTTGCAGGTGTGTTTATATATATTGCATCATGCATATGGTTTCTCTGACATTTT TTATTTGTTTGTGGTATAGGGAGCCACGTGGTTTTGGGTTTGTTCAATATTTGGATCCAGATGATGCTGCAGATGCGAAATATCAGATGGATGGTCAAAT TTTTCTTGGCCGTGAGTTAACTGTGGTGTTTGCAGAGGAAAACAGAAAGAAACCTGCAGAAATGAGAGCAAGAGAACGTGGAAGGTCATATGATTATAGA AGATCTCCACGCCGATATTCCCGTTCACCACGGTATGGGCAATACTCACGAAGTCCAGACTATTCACCTTCTCCTCGAGGAAGGCATTATTCCAGGTTTG TTATTTCCTTAGCTCAATGAGTTAGTTATAACTTGTAGGCATTATTCCATTTCGAGGTTTGTTATTTCCTTAGCTCAATTTTTGTAAAGCTGCTTTTATT ATGATTCAGGTCCATCTCACCAAGAGACAGAAGATATCGGGGGCGGTCATACTCCAGATCACCTTATGGATCAAGAAGCCGCAGTCGAAGCAGGAGTTAC CGTAGGGGTTATAGCAGGAGCTTAAGTCGAAGCCCTGGGTACTCTAGGTGAATGGCAAGTCAAGCTTGATGAACATGGAGGAAGATGCTGTAGTTTATAA TTTGTCAGTGAGGTCTTGTGTGTTTCTGTTCTTCCAGATTGTTAATATTAATGGTTTTCTGGTTGAAAGGATTTATGATATGCTTTTTCTTTCAGCTTTC TGAAGAGACAATTATGTGTGGTTTATATTTTAATCTTAGTTTTTATTGAACTGCTTATTTCCGTGGATGTTTAGTCTGCCCTGTTTTTACTGCATGGATG TTTGGGTATTAACCTTAACTTATGCTTCATCTGTAGAGTCTGAGCCTGTGAGGTATTATCTATTTCAATGAAATCCTGCAAAATAAGTCAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_150658; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_310684
| Blastp | Serine/arginine-rich SC35-like splicing factor SCL30A from Arabidopsis with 75.93% of identity |
|---|---|
| Blastx | Serine/arginine-rich SC35-like splicing factor SCL30A from Arabidopsis with 75% of identity |
| Eggnog | serine arginine-rich splicing factor(ENOG4111J16) |
| Kegg | Link to kegg annotations (AT3G13570) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428894.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |