Ll_transcript_501423

• Id Trinity: TRINITY_DN47352_c0_g1_i21
• Name Transcript: Ll_transcript_501423
• Sequence: ATCGTCTACTATATATGACAGCGGCTAAAGTGGATTCTGAGATGTTATCGCGTGTTGTTCTTTTATTCTGATTTTGCGACGCTCTCTTCTCTTCTCTTCT TTCTGGAGACTAACTCTTCGGTGAGAAAGTGCAAGCAATGGATGAGGTCAAGAAGCATAAATCTAGGAAAGACGGGGATTCTAAGCGGAGTCACCGTGAT CCAGATCGTAATGCCGATAAGAGAGATTCCGAGACGCGGCGTCATGATAAAGACAAGAATAGTGATTCTGAAGATAGGCATGATAGAGATAGGGAGAAAC GTAAGGATAAGGAAAGGACCCGAGTCAAGGATGTAGATAAAGAGCGAACTCGAGACAAGAAAGTCGAAAGAGATAGGGATGACAAGGAAAGGGAGAGGAG CGATAGGGTGAGAGAAAAAGATCGAGACAAGGTTAAGGAGAAGCGACGAGAGAAAGATAGGGAAAGGGAAAAGGAAAGGGAAAGGGAAAGGGAAAGGGAA AGGAGGGAGCGTGCGAGGGAGAAGGAAATAGAAAGAGAAAAGGGGAGGAGAGGACACGAGAGGGAGAAGCGTAGGAACGTTGATAGCAAAAACAGTGATG ATGAATCGAGGGAGAGAGATAGGAAGCGGCATAGGAAAGATGATGATGATTACAAGGGGCGAGAGAGGGAAAGGATTGTCAGCAAGTCGAACAGGCAAAC TGAGAATAGTGAAGCTAGCCCAAGGAAGAAGAGTAGTGAAGATGAGGACGGTACTAAAGATGATGAGAGTAAACCTACACGCGAAGAGGAGATGGAGATT GAACAAAGGAGACTGGATGATGAAATGGAAAAGAGGCGGAGGAGAGTTCAAGAGTGGCAAGAGCTTAAGAGGAAGAGAGAAGAAACAGAAAGAGAAAAGC AAGGTGAAGCCAGTGCTGATGAACCTGAGTCCAGGAAGACTTGGACCCTTGAAGGGGAATCTGATGATGAAGAAGGACCGGCTGCTGGGAAACAGGACAC AGCTATGGATGTAGATGAAGATGAAGATGAAAAACCTGCTGACAAGGAACCTATGGATTTGGTGGTAAGTCATGATAATGGAACAGTTGCGTCCGACTTA CAGGATGGAAATACTGGTGCTCCTGAAGATGAAGAGATCGATCCATTGGATGCTTTCATGAATTCTATGGTTCTTCCTGAAGTTGAAAAGCTGAACAATG CTGCAGCCTTGTCACTTACTGATAAAGCTGCTGACTTGAAGCCCAAGGATAAGGAGGATGAGCAAAGTCGTGGTGGACAGGCAAGGAAAGGTTCAAATAA ATCTATCGGGAGAATAATTCCCGGTGAAGAGTTTGACTCAGATACTGCAGATCTTGAATTTGAGGGGGATCCATCCGATGAAGATGATGATGAGTTCATG AAAAGAGTGAAGAAAACAAAAGCTGAGAAGCTTTCTATAGTTGACCACTCGAAAATTGATTATATGCCATTCAAGAAAAACTTTTTTATTGAAGTGAAAG AGATATCGAAGATGACTCTTGAAGAAGTTGCATTATATAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCGAAGCCTGTAAAATCATGGCA CCAGACTGGACTTACCAGCAAAATTTTGGACACAATAAAGAAGATGAACTACGAAAAGCCGATGTCTATTCAAGCTCAGGCGCTGCCAATAATCATGAGT GGTCGAGACTGCATAGGCATTGCTAAAACTGGTTCTGGCAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTGTTG CAGGAGATGGACCTATTGGGCTTATTATGGCCCCCACAAGAGAGCTTGTTCAACAGATTCACAGTGACATAAAGAAGTTTTCAAAGGTAATGGGTATCAG GTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCTGAGATAGTGGTTTGCACTCCAGGTAGGATGATCGAC ATACTATGCACCAGTAGTGGAAAAATAACCAACCTGCGTCGAGTCACTTATCTGGTTATGGACGAGGCTGATCGAATGTTTGACATGGGATTTGAACCTC AAATCACACGTATTGTTCAGAATATCCGGCCTGATCGTCAAACGGTTCTCTTCTCTGCTACTTTCCCCCGTCAGGTCGAAATTCTGGCTCGTAAAGTTTT GAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGACATAACACAGACTGTTGAGGTGAGGCCAGAAAATGAGAGGTTCTTTAGA CTCTTAGAAATATTGGGGGAATGGTGTGAGAAAGGAAAGATTTTGATATTTGTTCACTCACAAGAGAAATGTGATGTTTTGTTCAAGGATTTGCTCAGGC ATGGTTATCCATGCCTTTCTCTTCATGGGGCCAAGGATCAGACAGACCGTGAATCCACAATTTCTGATTTTAAAAGCAATGTTTGCAATTTGTTGGTTGC AACAAGTATTGCTGCCAGGGGATTAGACGTCAAGGAGCTTGATTTGGTCATTAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGG CGCACTGGCCGTGCTGGCCGAAAGGGTTGTGCCATTACATTTATTTCCGAGGAAGATGCAAGATATGCACCAGATCTGGCAAAAGCCTTGGAGCTATCTG AGCAGGTTGTTCCCAATGACCTGAAAGCTCTTGCTGATAGCTTTATGGCGAAAGTGAATCAAGGACTTGAGCAAGCCCATGGAACTGGTTATGGAGGCAG TGGATTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAAGGCAGCAAAGAAAGCACAAGCCAAAGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAA GATGAAGATGACGGTATCAGGAAGGCAGGTGGTGACATCTCACAACATCCGGCTCTTGCTCAGATTCTTGCTGCCCAGAAAGTGAATTCTCCAGCAATGC CGAATCCCATCTCCGTTGGCCAGCCGATTTCAAATGGCGGGATACCTTCTTTGTCAGCTGTTCTTGGTCTCCAGACCGCAACAGTCTTGCCTGGGAATGA TGTGGCAGCTCGAGCAGCATTAGCTGCTATAAACCTGCAGCACCACTTAGCAAAGATACAATCTGAAGCATTGCCAGAGCATTATGTGGCCGAGTTGGAG ATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTGACGCACAAGGATACTTTAGGCCCAATTTCTGACTGGACTGGAGCTGCAATTACCACTAGGGGGC AGCATTTTCAACCTGGCAAGATCCCGGGACCTGGAGAACGCAAACTCTACTTGTTCATTGAGGGTTCCAGTGAGCAGTCTGTTAAGAGAGCTAAAGCAGA GTTGAAGCATGTTTTGGAAGACTTCACAAATTTGCAACTTCCTGGTGGAACTCAACCAGGGAAATACTCCGTCGTATGAAGGGCAAAATGGGACTCTGTA TAACACACTTGTTTCGCGCCTCAGTCTGGGAAAGGCTGCACTTATTGTCTGCCTTTATTACCCATTCATTGTAATACAGGTATGAGTATTATTGTGGAAA GTCTGGCCCATCTATTCTTGTGTGTCTGTGTTTACCTCTATAAAAGTACTACTCTTAATATCTCTCTGCATACTATAACAATAAATATTAAGATGTTTTT ATTTTTACTAAATTTTAAAGGCACAAACATCCTTTTGATTGTTTTCTTTCTTGTTCAGCATTCATTATGGTGCAGGTGGGCCTTTTGAGCCTATGCTTGC CTGTTCAATATACAATTGGTAAGAGCGGACCACCTTTATTATGTCGGCAGGGGTTCAAATCCTGTCAGGGTCAGTTGTTGGATGGTTATCTGTAAGTACA TCAATAAGTGCTCGTTGAACCTCGAGACTTGCTGATCTTGAGCTGAGGCAGCTATCCCATGACCCGAAATTTTTTTGTTACTAAGAAAAATTGTTCTGTC CATTTTACTTGTTTTGTGGCTGTGAAAGGTGCTAATAATATTGCGGCTTTGTTTCATCTAGGTCCTGTTTGATTTTGCAGCAAAAATCTCAAAATCTTGA TTGTGCCCTGTAATATCCCATGTGCATGAGTTGAGTCTTGGCCTCCTAGAACCTATGAAACTATCATGTGTTTGTTCTTCTGATTGTTATACGTGTCACT TTCAGATTTTGGCTTGGAGTTCTTTCATGATCATATCACGAGGGGAAACAAGGCGTAATGGGATATCGCATTATTGCCATAGTATGGATTTCAGAACGTG TACCAAAAACAATGCCCATGGCTCTTATACTTATCCTATCTAGAAAGAACTCTCAAATTCTGCATTTGTATTGCAATTCATAGGAATGTTATAAAATATT ATATGGTTTGCTTAAAGCATTTCTTGGAATTGTGGATGGAAAATTTTTGGCGACATTTTTCAAACAACTCTTATATTACATTATCTTTTTATTTATCTCT CTTTAATTACCC
• Tissue: pods
• Gene name: LI_gene_151908;
• Additional information: details;

Expression of Ll_transcript_501423

FPKM

• PAB: 0.3
• PNAB: 1.5
• PS1: 1.4
• PS2: 1.8
• PS3: 1
• PW1: 0.3
• PW2: 1.7
• PW3: 2.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_501423

• Blastp: DEAD-box ATP-dependent RNA helicase 42 from Arabidopsis with 69.87% of identity
• Blastx: DEAD-box ATP-dependent RNA helicase 42 from Arabidopsis with 70.41% of identity
• Eggnog: ATP-dependent RNA helicase(ENOG410XSQV)
• Kegg: Link to kegg annotations (AT1G20920)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019444598.1)
• Pfam: DEAD/DEAH box helicase (PF00270.28)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;