Ll_transcript_442154

• Id Trinity: TRINITY_DN47818_c0_g2_i2
• Name Transcript: Ll_transcript_442154
• Sequence: ATTCCTTTTCATTCCCAATCTCAAACCCTATCGCAATTTCAATCTCAATTCATGGCTCGTACAAAGCAAACAGCTCGCAAATCCACCGGTGGCAAGGCTC CAAGGAAGCAACTCGCTACCAAGGCTGCAAGGAAATCTGCTCCTACAACCGGAGGAGTCAAGAAGCCCCATCGTTATCGCCCTGGAACTGTTGCCCTACG TGAGATCCGAAAATACCAGAAGAGTACGGAACTATTGATAAGGAAATTACCTTTCCAGCGTTTGGTTCGTGAAATAGCACAAGATTTCAAAACTGATTTG AGATTTCAGAGTCATGCTGTGCTTGCTCTTCAAGAAGCTGCTGAAGCTTATTTAGTTGGATTGTTCGAGGACACCAATTTATGTGCCATTCATGCTAAGA GAGTCACTATTATGCCCAAAGATATTCAACTCGCTAGGCGTATTCGTGGTGAACGTGCTTAGTTCCGTTTAATTGCTTTTCGAATTTTTCAATTATAGTT TCACAGATGTGATCTTTTTGAATTGTATACTAATGAAATGGGATTTTTGTCATAGTGTAATGTTTCGTGAAATCATAGATAGGATTTTGGTATATTTTGT TTTATGGGGTTCTTATCATGCTTCAGAGTATTGAAATCTATGGGATGCTGAATTCTGCGTAATTGATTAGTCATTTTGTCATTTTTCGTGCAAATCAATC TTTTTTTCACGTTCAGAGTGAGATTGAGTTGATTGTAGGAAGTTCTTATGCAATGATATGCTGTTTGGGCTTGGGCCGGAACCTCAATGAGTGTGTTGGA ATAGATATAAAAATGATAGTTTTGATTTGATTGCAAAAA
• Tissue: pods
• Gene name: LI_gene_155761;
• Additional information: details;

Expression of Ll_transcript_442154

FPKM

• PAB: 77.9
• PNAB: 52
• PS1: 45.9
• PS2: 29.8
• PS3: 43.1
• PW1: 59.9
• PW2: 39.2
• PW3: 18.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_442154

• Blastp: Histone H3.3 from Vitis with 100% of identity
• Blastx: Histone H3.3 from Vitis with 100% of identity
• Eggnog: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling(COG2036)
• Kegg: Link to kegg annotations (100248958)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_007163667.1)
• Pfam: Core histone H2A/H2B/H3/H4 (PF00125.23)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;