Ll_transcript_442805

• Id Trinity: TRINITY_DN47879_c1_g1_i4
• Name Transcript: Ll_transcript_442805
• Sequence: CCTAAACACATGCATTTGAAAAAAAGTTGAAAATGGAAGAGAGGAAAAAATAACAGTACAACATGTCCCCATAAAATTATATACAGACCACAGCAAGAAC ATAAAGGACACTCTTTTCTCCTTTTTGCTTCACTTTTTTCTTCACATTCCTTCCATTTTTTTCTTTGCTGATTCCCCGTGTCAAAAATCAACACCCTTTT CACTCTTTTCCGTGTCTTACTTTTCTTTTTCTATAAAAACCATTTCCCCATTACTAGGGTTTGAAATGTGGAGGGAGAATGGAACCCTCTGAATCCGATT CTGCTCTTGTTTCCATTGGTTCTTCTGTCACTGACCCTCAATTGGGTTCTCAATCAGCACCGTCTTCTATTCATTCCCATCATGATCGCGGTCCTGAACC CTCAGATCTCAGTCATGTGACCCAGGATGAAGAAGAAGAAGCACTTGGTGCAGAGCTTGAGACCAAGTTGGATTTGAAGGGTGAGGGTGAAGTGGGTGGT GAAACTGTGGATAAAGTTTCGAACTTTGATGATGGGGAACAAGTATGTGATGAGGGTAGTGGTGGTGGTGTTATTGAAGTTGAAGAATCTGTTAAGGTTA ATGTGAATGATGGGTTTGGTGGAAATATTAGGGGTTGGGATTGTAATAGTTGGGATGAGGATGTGAATGATGGTGTGAATGTGAATGAGGGTTTTAATGA GTATGAGGTTGGTGGAGATGATTATGCTGTGAATGATGGTGATTGGGCACAGGTAGAAGACAAAATCAGGGGTAGAACTCAACATTACCCTTTAAGGCCT GGTGCTGAGGATTGTGCATATTTTATGAAGACTGGGAATTGTAAATTTGGTTTCAATTGCAAGTTTAACCATCCGATCCGAACGAGAAACCAGTCTTTAA AGGATAAGGCAGCAGAACGAGAAGACTCAACAGAAAGATTGAGCCAGACAGAGTGCAAGTATTATCTAAGGTCTGGAGGTTGCAAGTTTGGAAAGGCTTG TAAATATAACCACACAAGAGGAAAATATTCAGCCGCCCCAGTTTCAGAACTTAACTTTCTCGGCCTACCTATTCGTCTTGGAGAGAGAGAGTGCCCCTAT TACATGCGAACTGGCTCTTGTAAGTATGGAGCAACCTGCAAGTTTAATCATCCTGATCCTACAACTATCGGGGGACCAGATTCTCCTTCTGGGTATGGTA ATGAAGGGTCTATTTCATTACAAGGTGTATCAAAACCATCTGTATCCTCTTGGTCTCCTCCAAGAACATTAAATGAAACACCTTTTGTGCCAATGCTTTC ACCTTCTCAAGGGGTTTCTCCCCGAAGTTCTGATTGGAATGGATATCAGGCACCTATGTACCTATCTGATTGGAGTATGCATCCACCTTCTGCATATGTC ATGAGCAATCCAGCAATTGAAACAAATGTTTATATGCAACGTCAAAACCAGATGCCGGTTGATGACTTCCCAGAGAGGCCTGGTGAACCTGAATGCAGCT ACTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGCAAATTTCACCATCCAAAGAATCGGACTGCAAGATTACCTCCATGCATCCTCAGTGACAA GGGTCTGCCTTTGAGGCCTGACCAAAATATCTGTTCACATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGCAGGTTTGACCACCCGATAGAC TTGCCTTCCCCGGTGATTCCAGCATTTGATGAGCAGTCTTTTACAAACTCACCTAATGTTGAGGTGGCTGGGATTGGTGGAAGTGCAGATGCAAGTGATG TGACAATTCAGCAATATGTATAAAGATCTTTGTCAAGTATCTTCTAGCTTTTTGAGGACTCATCACCCAGAATTTTAGCTTTCTTCTTAAACTTGATAAA TCTATTTAACTTTCTCTGGCTCTGCCTTATGCAACAGAAGCTTTGCAGATAATAGCAATATATATGTCAAACAGAAGTTTTATGTATTTATTACAAGTAA CAACAGCACCTGTAGGCTAATGTGTGTGAATGTGAATTTTCTTGATTTACTAGTGCCAATGGAGTTATGAACCTTGGCTATGGCTAAAAGGATGACTGTT ACAGGTAAGCAGAGGCCCCCATAAAACAAAGCACTAACGAGCCACGGGTTGGCTTATATAGTCTCTTGATTCTCCTCATGGTGGTTATTTTGATTCTCTG ACATGATTTTTGATGTTTCTTTTCCCCATACCCCACTAAGTAGGAGCTTTGTGCAATGGGTTGTCCTTTTTCTTATATTGTCTATTGTAGTTGTGCCTCT TAGCCTCCTATAGATAAAAGACCATTGAGCTACAACGCGAATAAAAGAGACTCCAATAAGATCATGGAACGGAAGTTCACCACGAGTCCACGACGACCCT CTGGCAGGTTGTTCAATCTAATGATTGTGCAAAGTTAGCTAGAAAATCTAAGTTGCCTGCCTTCCTTCATAGCGTGACTGTGTGGAGCTCCTAAGGTTGA GATTTTAACTCAGCAATGACAATGATAAAGTGTATGGTTGGGTGTGAGATCACCCTTTCATCAGAAGGCCAACCACAACTGTAGAAACACTCTTAAGCCA AGGTGAGAGATGTAGGAATCCCCCATTCTTAGTCATTAACACACTTTAGAAGCTAGAATTCTGAACAAACCTTGCACCTTCACAAGTTGCTCGTCTTCCT CCCTCTCTAGAACCCATCATACTTCACTTTCACTCACTGGCCACTGGTCTGGCAAAAAACATGTGACAAGCTGAACTTGCCCGGAGGACCCATCGTCATT GCCCGATTGCACCCGGTCTAAATCATGGAGTAACACATGAATTGAGATGATAGATTTGATCACTTTTCATGTTAGCACACTATAGCCAAAAATAAGTTTA TCTGATAATGTGTGTGGTTATGTAGTGCTTGCTACATTTTATTGGAACGGTACATGTGTTACATACACTTTAATAGAGTGGTACAATTCCTTTGAAGTAC ACAAGGACATGTACAAAGAGGAATCTAGATCCTCACCAACACGGGATAAAAATTGTATAGATCCTCTCCAGCACCGGATAAAAATTGTAACATCTTTGGG GGAAAATGTTTGCAGTTATGGGTTTACTGTAGGTCAACATCTTACTTGCAATGTCAAGAAATACTATTGTTCTTATTATTACTATTTTAAATGTGATGAT CTGCTTTCAAATTGAGTAGTTTGTTATGTACACTTGTATTGTTTCAAGTACATATAAATTTATCAACGGACGTTGGTTCAAGTGGTACATGCTTGATTCC CCTTAAACAAGGTCTCGGGTTCGATCC
• Tissue: pods
• Gene name: LI_gene_156286;
• Additional information: details;

Expression of Ll_transcript_442805

FPKM

• PAB: 15.9
• PNAB: 25.1
• PS1: 48.7
• PS2: 16.4
• PS3: 21.7
• PW1: 45
• PW2: 33.2
• PW3: 12.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_442805

• Blastp: Zinc finger CCCH domain-containing protein 43 from Arabidopsis with 55.87% of identity
• Blastx: Zinc finger CCCH domain-containing protein 43 from Arabidopsis with 53.68% of identity
• Eggnog: zinc finger(COG5063)
• Kegg: Link to kegg annotations (AT3G48440)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019457493.1)
• Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (PF00642.23)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;