| Id Trinity | TRINITY_DN48070_c0_g6_i9 |
|---|---|
| Name Transcript | Ll_transcript_326506 |
| Sequence | AAAATATTCACTTTTTCACGATTGAAAATGAAAATATACATTTTTATCTAGAGATAGATAATGATTGTATACATTTTGAATTAAATCTAATTAACATTAT TATGATTGAAAGGTGAAATTGACAAATTAGATAAACTACTCATCTCATCTTAAATTAGACATTTTAATAAAAATAAAAAATTATAATTTAAAGTATATCT AACAAAAAAATTATAATCTAAAATACACCAAATACAAAATATATATTTTAATTTGGGGTCAAATCTAGTCAAATCTAATTAACAATGTTATGAGGGTGAA TTTGACAAATATTATCATAATATAATGCTGAAAAATGATACACGTGATAAATAACAGAGACCGGCAAAATCCAAATTTGCATATTTTGTATTCCCATCGT AAGCAATGGCAACAACTATTTTCACTATTCTATCACTTAATTTCAAAATGGATAAGCTTGTCAAAAGACCAATTTGTTTAGAACTTAGTTTCTTTATTAC AAAGTTAATAGTGTGTCTCGCTATTATTCATCCTCTATCTTTATTTATTTACAAATGTGTTTGTTATATCATGATCTATATCATTCTATATTTTAAATTA CTTATATCTCATATTATATCCATAAATATAAACTAAGAAGATCACCTATATCTAAATAAATAAGTATATATAACATACTCACCCTCTGTTTTATTTCTAT TCCTAGTAAACCTTTCAAAAAGAGAGTGAGGGAGAGAACAAATACATTGATTTTGTTTTTGTGTCATTGTAGCCATAACTTCTTATTTCGATTCCTTTTG CTTTACTCTGTAATGGATTTGGATCATGATCGTTCCATAGTGGAGAGTGCTAGTGTTGATGTTTGGACATTGATTGACGCTGCACTCGTTGTTGCTTCCA TCGACTACGCCGACGAATTCAAACGCCGTAGAGAAGGAATCGTGGAGCGCATTTACACAACCATGTCATCTTCTCCACCGTGTCGGAATCGCGTAGCCAA TAACAATGCAGAAATCGAGAAACATGTAGAGGAAGAGTTGAATCCTCGTGGAGGGTTGTTTAATGATGAGAAGAAGAAGAAGAATAAGAATATTCTAGAG ATTAAGCAACAACTTGAATACACTGACCAGTCCGAAGAAACCTTGGTGGAGTTGCTACATAATCTTGATGACATTGATGTTACATTTCAAGCATTAAAGG ACACTAACATTGGGAGGCATGTGAGTAAGTTGGGGAAACATTCCTCTAATGATATTAGGAGATTGGCAAAGCTTCTTATCAGGAAGTGGAAAGGAGTTGT AGATGAATGGGTAAAGTTAGGAGAAGCAGTTACTAATGTCATGGCATCTGATGAAGAATCTTGTCAGCAGAAAACCCCACAGAATGACCATCAACAGAGT CTTGCTTTTGTATGCTCAACAAATCCACCAAATGGGAATTCAGGGTCAGATGTAGAATTAAAATCGAAATCTATTTCTTACAAAGTAGCTCTACCAAAAT CAGCAGCACCTGCACCATTATCACTTCCAACTTCCACTCCTCAAAATAGACAAAGGGAAAGCAAATTAGACTCTGAAAGATTTGCTTATGCAAGAAAACG GCTCCAAGAGAACTATAAAGAAATTGCAAACGGTGGGAATTTCTTTTCCTTGTTATCCATTTTGGTTCTATTTCAATAATGTTTCTTTGCATTACTGATA CTATTATTGTTTATGTTGTCGGATTTCTCAAGCTAAAAAGCAGAAAATGATTCAAGTGATGGAACTCCACGAGTTACCTAAACCCAATAACAAGAATGTC TTCTTTGCAAAGAAACAACAACGTTTGCATGGAAGGTACCGGTGAAAGCACATACCAGCAAGTTTAATATTAAAAGGTTTCTATGAGGAAAGAAACCTTA TAACCCCTTTCATTTTTTAATCCCCAACATAGGAACCCTTTTGGTTTTTCATTCATTTCATTAAAAATGACAACATCAAAGTCAATAATATTTACTTGTG ACTTTTTGACAATTTAGTGAGCAGTAACAATTGTTTTAATTGCTTAATATTCAAAATTCATAATCAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_157961; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_326506
| Blastp | Probable mediator of RNA polymerase II transcription subunit 26c from Arabidopsis with 40.92% of identity |
|---|---|
| Blastx | Probable mediator of RNA polymerase II transcription subunit 26c from Arabidopsis with 40.56% of identity |
| Eggnog | Transcription elongation(ENOG411201A) |
| Kegg | Link to kegg annotations (AT5G09850) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019436489.1) |
| Pfam | TFIIS helical bundle-like domain (PF08711.10) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |