Ll_transcript_507918

• Id Trinity: TRINITY_DN48199_c3_g4_i3
• Name Transcript: Ll_transcript_507918
• Sequence: CAATAATACAGCTGGTCTGCACCCCTCGGTCAACGTGCCTTCACAGGTACCCAAGGCTGCCACTCCTCACTCCACTCCACGCGTGAATCAAACTTACCAA ACCATTGGCCTAGTTTCAGCATGCTCCAGCCCAAATGCTCCAAACAGATTTTCCAACCTTGAGGACAATGTTGCTCTTGGAGGAGAAGGCAATGATGAGG ACCCTGAATCACAGCAGCCCAAGAGGCCCAAAAGAACTATAGAGAGACCCAAGTGGTTTTCTGATTATGAGTAGTATCAAATGTTTATGTTATTTTGTTG TTATTTTCAATCAAATGGGCTTCCCTTGGGTCAGCCCATACTACTAGTAGAACCCTAAATCACTCTCCATGTAGTATTTAAAGTTATCAGTTGCAATGAA GCAGTCATGAAAATTCCAGAATTCTAATTTCTTTGAACATTTTTCCCTTTCTTCTTACTGTTCAATAGTGAAACCTTATCAGACCCTTACTGGTGCCTTT CAGTGTAATTACTTAAGCAAAAAATTGTTAACTAACTTATAAGGGTACTTAGAAGTTTAATTGATGTTGTTGCTGTCATGGAAATCTAGAGGGAGTAAAT TGATTCTGACTGACCTATATCTGTTGTTGCATATATACATTGTGATGTATGTTTACTTTTAGTGAATACCTCAACCTTAAAAGAATCAAATTCAACGACG ATCTAGTTCATTTTAGATTATAGTTGATCTATATACATAAATGTGGTAAGAGGAATCTAGAAGGAAGTTGTATTTTATTTTTAGATTAGATGTCCCGTTT TGCAAGTTGGATTCGTTCCGTGTTTATGACTTTGAAGTAGTTTGACCATGTATAGTAGTGTTAGAATTTACATGTCCGCGTTTGGCTTGCCAATTGGAAG TTGATGAAGAGAATTGAGAATATGATCATATTGTGTTAGATTTGTTTGAACCTTATGTGTTAGACGTTTGCAATGGTTTAAATTACAGTTGTGGTTGTGG TTACGTTGCGTTTAGTTTTGTTGTGAGGCTTGTCTTTGTTTATTCAACCTTCTCCCTTTTTTTCATCCGTTATTCAAGTCTATTCTATTTAGTTTTGTTT TTGCTAGTTGTTGGTTCATTGATGTTTTTGTACTAGACTAGTAGGTGTTTCAGTCTTAAATAAATAGTAATGAGTTATGCATTATAGTTGCTTGAGGAAA TTCCACAAGGAGAAATCCGATAACAAAATTATTTTATTGGAAATAACATCCCCGGTATTGGTCTTATACACATCTTGCACTTTCTTGTGCATTTCTTTTG GAAGGTCTGAAGCTTCAACACAGTGTAAAGGACTAACCGGGTTCCACTCCAACAAGTTACCATTTTGGTGAGCCATAACTAAATCAACATACACAAATGT CTGTATTTCAAGCAAGAGCCATTCGACATGCACAAACATGTATATCTAGATGCTCTTATACTCTTCATTCTTGTCACTCACACACTCCCCGCTACATGTC TAAGCTTGCTCCTTTGCAGGAGAGGAAAATGAGAGACAGGGTTAAAATATTTGCAAAAGCAGGTGATGGAGGTGGTGGTTGTATCAGCTTTCGCCGTAGC CAACGTGATCGCCATGGCAGACCTGATGGTGGCAATGGTGGTAGAGGCGGTGATGTGATTTTGGAATGCTCTCGCAGAGTTTGGGATTATAGTGGTTTGC AGCATCACCTAATAGCTGAGAAAGGAGGACAAGGGTTATCAAAGAATAAGATAGGAACCAGGGGTGCTGACAAGAACTGTGAGTTCATTCCGAAATCATA TACTCTAGTAGGTTGTTCATGTACCGGTTGGCACTGTACTTCATCTTCTTAGCGACCATATTCCTTCTGTAGTCAAAATTGAATCATCAGCAGATGTAGA TCCTTGGGATATTCCGGGTGCACTTGCTGAAGATCTTTCTGACCCTGTTGGTAGTTCTTTCTCCAATGCTACAAGTGGCAAAGCTGAAGTTGAAGCAAGA CATCCTACTGGCTGCTCCACATCACAAGGTGCTGAAACAAAGGTTGAGAAATCTTTAAAATCAAGACAATTTGCACCAACGGATATATCTTCCCAACTTT CCAGTATGGACGACACTCTCAAATTTGGTACAGAAGATATAGGAGAGGAACAAGAGATACAATACAGTGTGGCAGAATTAACAGAAGAAGGTCAACAAAT TATCATTGCTCGTGGAGGAGAGGGTGGTCTGGGCAATGTGTCTATGTCGAAAGATTTAAGGAAGTCTATGGCTACAAAGGTAGGGGCCTATCAAGATAGA CCAGATCTTGACGACTCGGACAGTGATTACTCCTCCCTGAGTGGAGGCGTGCCTGGTTCCGAGACTGTTCTTATATTAGAGCTCAAGAGCATTGCTGATG TAAGCTTTGTTGGAATGCCTAATGCTGGTAAAAGCACTCTACTTGGGGCTATCTCAAGAGCTAAGCCTGCTGTTGGCCACTATGCCTTTACCACTCTTAG GCCTAATTTGGGGAATCTCAACTATGATGATTTCTCAATAACCGTGGCTGATATTCCTGGACTTATAAAGGGTGCACACGAAAACCGTGGACTTGGACAT GCATTTCTGCGCCACATAGAGCGCACAAAGGTTCTGGCTTATGTAGTAGACTTGGCTGCTGCTTTAGATGGAAGGAAGGGAATTCCACCATGGGAACAGC TGAAAGACTTAATCCTAGAGCTTGAGTACCACCAGGACGGGTTATCCAATCGGCCATCCTTGATTGTGGCGAATAAGATCGACGAGGAAGGTGCAGAGGA AGTTTATAAAGAGTTACAGAGAAGGGTTCAGGGTGCTACCATCTTTCCTGTGTGTGCTGTTTTGGGAGATGGTATACCAGAACTTAAAGCTGGCCTTAGA TTACTTGTCAATAGTGAAATGTCATCTACACTTTCCTTGGATCAAATTTTTATAGATTAGATTACTATTAACAACTACTCATGTATTTGTCCAAACACCC CAGTTAGGAAAGATAGACCTGGAATTGTTCTATGCAGGGTTGAGGCCTTTTTTTGGTACATGCATTTGTGAAATCCAAAATAAACTCCCTAAAAGCAATG GTCTTAGCTTCATCAAACATCTAGTATGTGCCACATTAGTATATTTTTTATATTGTTGTTTTGATTTGGTCATACCAAAA
• Tissue: pods
• Gene name: LI_gene_158989;
• Additional information: details;

Expression of Ll_transcript_507918

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 1.5
• PS2: 2
• PS3: 1.5
• PW1: 1.1
• PW2: 0.7
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_507918

• Blastp: Probable GTP-binding protein OBGM, mitochondrial from Arabidopsis with 68.25% of identity
• Blastx: Probable GTP-binding protein OBGM, mitochondrial from Arabidopsis with 56.18% of identity
• Eggnog: An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control(COG0536)
• Kegg: Link to kegg annotations (AT1G07615)
• CantataDB: Link to cantataDB annotations (CNT0002738)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019453178.1)
• Pfam: 50S ribosome-binding GTPase (PF01926.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;