Id Trinity | TRINITY_DN48297_c0_g1_i4 |
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Name Transcript | Ll_transcript_303581 |
Sequence | GAAAAGGGGGAGGGGCAAGCTCGGAAAGAAAGTGCAGTTGTTGGATTCATAATTGATTGAACGAGAAGAGCAGCTAAGTGATTAAGTGTGTGAGCCATCT TTCTCATTTCTTAACAAAAATCACTTAATAATAATAAGCACTCTTTCTCATCTAGGGTTTACTCTTTCTCTTCAATCTCTTCTCTGGTCTTATTATTAAC TAAAAAGAACGCCATGCGTGGGTTTCAAAAATCGAAACGAGTAACATGGGCTTCTGCTTTAAATCTTTGTCAGGATGCTAAATGCAAGATCTCAGTCACT TCCAACATGGGAGGGCCTAGCCATGGTGATAGTTTCTGGAGGTGTACTGCTGGTGCATTCAGAAGCATCTGAGGGAAAGTTGACCAAAATCCTTGATTGG CCAGCCTATTAACTCAGATCTCACCTTTCAGAGTGTTACTGAATATAACTCGTATGATGTCTGTTGTGTGACATTAGGATGATAATGAAGGGATGGAGGG TGGCAAGATCTGATTCGAGACATTCTGAAACAGCTTACCATTTGGATTTAAGAATGTTATTACTTCTGGTCAATCTTGGTGCTACCCCAAGTTTTCTGTG TACTAATTGGTGAAAGAAGGCCAGATTCATGTGTAGGAAAATCTTTCATTATGTGTCCAGGTTTAATGAGAGGCATAGCCATCAGTATCCTGCCTAGCAG GCTAGCAGCAAGGAAAAGATTAGGGGGGACTTTGGATGTAGTTTTCCTTTGGTCCCTACACTTGGCTATGAAAATCTAAAAAAACCATGAGGAACAGAAG ATCTCGATGCCTAACCTTTAAGTACCTATCAGATGAAACTTATGGATTTCAAGTTAAGTTATTCTTATCAGAGGACTCTCCTTCTCTAGTTGGGTTAAGT TCTCAAGATCACCTCCAAGCAAAGAGATCATTGTCCTCGCATCCAGATGGAACAGGTTCCGATGACATCCTACCTCCTGGCTTTGAGGGAACTCATGCTT CAAGTCAGTTCGAGATCGATCTGTCCCAAATACCAGTGATTCCATGGATTAATCCTCCCAAGATTGTTCTGGATCTCACATGGCAGGTGGTGGTTGGGGA AGAAAGCAAAGAGGTGGAGGAACAACATAAGAGGGAAATGAGAGTACTTGAAGCTATTTATCCTCGCCCATCCTCCATTCCTCCAAACCCTGCTATTGCA ATTGATGTTGAAGATTCCCATTCCATTGATGATGGTGAAACTGCTTTGATACCAATTACGGCTACTGAAGATGAAGATGTTGCAGTAGATGCAGTATCTG ATTCACAGTCTCATGAATTACCTCCTGTCATACCGAGAGGTCCAATGCAGTTAGCTGGTGGTGTAGTATCTGATGTAGATGCTGCATCTGTAGCTTTAAC TAATATAATAAAAAGCAATCAGCATGGAAATTTGTTTGATCATGAAGTTCTTAATAACATTCTGAACAATCCAGAAATGATTGAGAAGTTGGTTAGAGAT TACGGAGCAGCTAATAACTTGCAATATGTAAATAATCAAGGGTCATCTTCAGCAACCTACTTGCAGCCACACATTCCTATTAATCAAGGAGAGACCAATA TACCTTCCTCAGTTAGTCTTCCAGCAACTTCTTATCCTCCTTCAACTGGAGGTCAAGTGGGACCTGTTGCTACTCAGTGGCTACCTAGGCCTTCAATGAG TTCAGTTACTGTTTCTCCTCATGTTGAAGTCCCGTCGATAAAGGATGCGAACTACTATAAGAGCTTAATTCAACAACATGGAGGAGATGGAAAAGAAACA CTTCCGTATTACAGTAATCGTCAGATGAATCAGCCAGTAACAACTAACCATGGGACAGCACACATTTCTAGATCAAGGGATTCAAAACCAAAGATAATGA AGCCTTGTATCTTCTTTAACAGTTCAAGAGGATGTCGAAATGGAGCTAATTGTGCATACCAGCATGATGCACCGCTCCAGCAACAAGATGGTGGTGCTAT GCCAAGGATACAAAGTTCAAAGAGAATGAAAATGGATAGTTAGATTAGCAGTTAATAGAACATATAGCTGCTAGTGTTGATTGCCCTTCATTTTGATAGG GCTATGTCATGCTCCTTTAATGCAACCAAGCATTTGATGAGTGATTGTGAGCCTTATTTATTTCTAATCTTACATATACCATTATTGAACAGAATGCTCC ACTCCATTTTCTTTGCTTGATGGAGAATATACAGGAATTTATGTTTTTCTTGTGCTTTATTTATGATTTTGATTCAAGCATTGATTTTCATTTTGGACAA GAATAGAACTATAGAAATCAAATTGGGTGGAATGTTGACATCATGAGCTATT BLAST |
Tissue | pods |
Gene name | LI_gene_159847; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_303581
Blastp | Zinc finger CCCH domain-containing protein 6 from Arabidopsis with 42.35% of identity |
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Blastx | Zinc finger CCCH domain-containing protein 6 from Arabidopsis with 41.65% of identity |
Eggnog | zinc finger CCCH domain-containing protein(ENOG4111W68) |
Kegg | Link to kegg annotations (AT1G19860) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019417034.1) |
Pfam | - |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |