| Id Trinity | TRINITY_DN48435_c0_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_363334 |
| Sequence | TAATAATGTGTCTGAAGAAGGAAGGGGTGAAATTTTTTCACTTGTTGACTTGACTTGCTTGTTCCTTCAACCAATTTCCCTTACAATTTCTGAAGCAATG AACCTAGAGGTAAGTTATATTTTGGATTATTGAATACTCAATTTCTCAGAAATTTCATATCTATTGTTGAATTTTATATTACTTTTGATTCCTTTCACTA ACTTATACTATAGTATTAGTATATATTAGCATTACCATAAACATTGTATATGTGAGTGTTGTTCATATTAATGGTTTAGAAATTGGAATTGTAGCTAGAG GTTTGGACAGCTTTTGTTGCAATATTATTGTTTGTGGGTTTTGTTCTGAAAGACATAATCATGGGAGGGAAGAGTTCAAGAGAATCTGAGAGTAGTGTTA GGAGACATGTTCCTTCATCTTCATGGGATCATAACAATTATGGTTATGATGTTGGATACCCTTCTCATCAAAATCCATATCAAGCACCTCAAAACCAGCA TGCATCAGCACCAGTTGTTGACTATGGTACCCAACAACCAAGAAGGAGGTTGGATAAGAGATATTCTAGGATTGCTGATAATTACCACTCACTTGATGAG GTTACTGCTGCTCTTGCTAATGCTGGCCTGGAATCTTCTAATCTCATTGTCGGCATTGATTTCACGAAAAGCAATGAGTGGACAGGGAAGAGGTCATTCA ATAGAAAGAGTTTGCATCACATTGGAAGTGGTTATAATCCATATGAACAGGCAATCTCGATTATTGGGAAAACTTTATCAGTTTTCGATGAAGATAATTT GATTCCTTGTTTCGGATTTGGAGATGCATCGACACATGATCAAGATGTATTTTCCTTCCATTCTGATGAGAGGTTCTGCAATGGATTTGAGGAAGTTTTG ACGCGATACAGAGAAATTGTTCCTCAACTCAAACTCGCAGGACCCACTTCTTTTGCCCCGATTATCGAAATGGGCATCACCATTGTTGAGCAAAGTGGTG GTCAATATCATGTCTTGCTAATAATTGCCGATGGACAGGTGACCAGAAGCATTGACACAGAGCCCGGCCACTTAAGCCCACAGGAAAAAAAGACAATAGA TGCAATTGTAAAAGCAAGTGAGTACCCACTATCCATAGTTTTAGTTGGAGTTGGAGATGGACCATGGGATATGATGAAAGAATTCGACGATAACATCCCC TTGCGAGCATTCGACAATTTTCAGTTTGTGAATTTTACAGAAATAATGTCGAAGAATGTTGACGCGACTAGAAGAGAGGCAGAGTTTGCCCTTGGAGCCT TGATGGAGATACCTTCTCAGTACAAGGCAACCATAGATCATGGCATATTGGGGTAATAAAATCACATTATTCATATTAATAAAACGAAAATAATCTCATG TTATATATGGTTTAATTGGTAAAATACTGGATTTGAAATCTTATGTTGATGCAAGTAGTACAAGGCGGGGACATTCACCCGATAGAGTTGCTCTACCCCC ACCTCTTTATGGTGTTGGAAGGAGTTCTTCTAGCAACACAGGAAGATCTTTCCGATCTAACAGTTTTCAGCAGAGTGCGCCTATGGATACTGGTAGAGGT CACACAGAACCATCTCCGAGTTCTTTATATGATAACAGGGTTTGCCCTATTTGTCTTACTAATGGGAAGGATATGGCCTTTGGTTGTGGGCATCAGACTT GTTGTGAATGCGGAGAAGACCTTGAACTATGCCCAATTTGCCGGAGCACAATCAAGACTAGAATAAGGCTTTTCTAGTTATCTATGTTCCATACATGCTT CCATGTAAATTGCATTAATTTCCAGAATAAGGGTTGGTCTGCATCATGAAGGGTGGAGTTTCTTGGCACAACAAACTTGAGCTTAAAAACAGCATTGGGA ATTTTGAGGCAAAAGTTACATTCCCTGTAGGGAAGAGTTTTTCATAAAAAGACCCCACTGTATATATGTAATTTGTGTTGAGAGTGTCATGTTTTGAAGT AAATTGCTTGTATAAATATTGTGTGGATTTTATTGTACTAAATTTCTTTTGTTTGGGTGTACATGTTTTGGTTCAAGTTCTGCATCAGTAACCATCCATA TAAAGTGATAAGATTATATAGCACTTCTGATGTTATTTATGAAATAATCCAAGTAGTGAGTGCAATTTGCCCCTAATTTTTATTACATACTTCTGAGTTC ATGCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_161052; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_363334
| Blastp | E3 ubiquitin-protein ligase RGLG5 from Arabidopsis with 69.77% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase RGLG2 from Arabidopsis with 76.92% of identity |
| Eggnog | copine family(ENOG410XPC8) |
| Kegg | Link to kegg annotations (AT1G67800) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019417025.1) |
| Pfam | Copine (PF07002.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |