| Id Trinity | TRINITY_DN48463_c2_g5_i3 |
|---|---|
| Name Transcript | Ll_transcript_363959 |
| Sequence | AACTTTTTGGTGATATTATTAGATCGACCAATAAAATTCTACAATTCTTTTGCACCCGATTGACTTATGATCCAATTCTTATATTTAACACCCATCCATC TTCCCAATTCTATCTTTTCTGTCCAAAATGAATTTTCCATTGTTAACATTTGTGTTGTTTATGTTGTTGAATAGCAACAACTACTATGGTTGTTTGGCTT CATCAACTGAAGAGGTTGTAACATGTTCCAACATAGTACCATTCACCCAACGTGCACATAACATATCAATAACAGATTTTGGTGGTGTTGGTGATGGACA AACACTAAACACAAAGGCCTTCAAAGAAGCCATAAGCAAGACTCAACAAATGGCAAAGAAAGGAGGTACCTTACTTTATATTCCATCAGGTGTTTACCTA ACTGAACCCTTTAATCTCACTAGTTCCATCACTCTATATCTTGCTTCTGGAGCCGTTATCAAAGCCTCACAGGATATATCAAATTGGCCGTTAATTGCAC CCTTGCCATCCTATGGAAGAGGCAGAGATAACCCTGGAGGAAGGTATATAAGTTTTATTCACGGAGATGGACTTGAGGATGTGATAATCACAGGTTTATA TCTGTTACTCATTATTTTTTGAAGAACTTTTCGAAAATATATTCATTGAAAATTATAAGAGTATAAAGAAAGGAAAATTGCATGCTGGAAAAGCTTTATA CTACATCTTCCATAATTGTTTGGTACTTGAGAGTTGGGACCGTACATGTGGTGTTCTAAAATTGCGGTTGCGGTTACGGTTGCGATTGTGGTAACGGTTG CGGTTACTGCGATTACGGTTATTGCGGCCGTTGTGATGCGGATTATGGTCGTTGCAGTGTGAATTACAGTGTAAGTAGAAATATATTTTTGACATGGATG TGGTCTGATACGGCATGATGCGGTTGCATTGCGATGCGGTCCGCAATTTCAAACACCTGGTACATGTTTTCATGTCAAAACTAAACCCTTTCTCTTTTAT TTATGTTCATAGGTGAAAATGGGACAATTGATGGGCAAGGAGATATTTGGTGGAAAATGAGGAGGAATAGAACTCTTCAGCATACCAGACCAGGCCTTGT GGAATTTATGAATTCCAAAAATATTATAATTTCAAATGTAGTTTTAAAGAACTCTCCCTTCTGGAATATACACCCAGTCTATTGCAGCAATGTTGTTGTT CGATTTGCCACAATTTTGGCTCCACATAAATCTCCTAATACTGATGGTGTTGATCCAGATTCGACCTCAAATGTGTGCATAGAGGACTCATACATATCTG TTGGGGATGATATTGTGGCCGTGAAGAGTGGATGGGATGAGTATGGGATTTCTTATGGTCGCCCTAGCGCTAACATCACCATTCGTCGCGTAAACGGGTC ATCTCAATTTGCAGGCATTGCTATTGGAAGTGAAGCCTCCGGAGGAGTGGAGAATGTAGTTGCTGAACATATCAACCTTTACAACATGGGAAGTGGTATA CACATTAAGACAAATATTGGTAGGGGAGGGTATATAAAGAATATAACTATATCTGATGTGTATATGGAGAATGTTAGGACAGGAATAAGGATTGCATCTA ATGCTGGGGGCAATGCTGATGACAAATATGATCCTAATGCTCTCACAATTGTTAAGGGTATCATTGTTAAGAATTTGAGAGGTGTGAAGGTTCATCAAGC AGGGATGATTCAAGGATATGAAAAATCACCTTTCACAAATATTTGTCTATCAGATATCAACCTTAGTGGAGAGACAGAATCTAGAACTCCAACTTGGAAA TGTTCTGATGTGTCTGGAAGTGCTTATCAAGTGAGTCCACGTCCATGTGCTGAACTTATCAGCAACCAATCTGCATCATGTGCCAATTCCTCTTGAGATT GATGGGAGATTTTATTTTTTCAACTCTTCAAATATTAATAATGATAATCTTTTTATTGATCCATCATAATAAAAGGCAAGTGAGTTAATTTTCTCACACA TTTTTTCCAACTTGAAAGCTGAATTTTGATCATTAGTGTTTATACAAGAGATAATATACCAACGGGCGCGTTGGTTCAAGTGGTACATGTTTGATTCCCC C BLAST |
| Tissue | pods |
| Gene name | LI_gene_161268; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_363959
| Blastp | Probable polygalacturonase from Vitis with 46.5% of identity |
|---|---|
| Blastx | Probable polygalacturonase from Vitis with 45.45% of identity |
| Eggnog | Glycoside hydrolase family 28(COG5434) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019461314.1) |
| Pfam | Glycosyl hydrolases family 28 (PF00295.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |