Ll_transcript_368216

• Id Trinity: TRINITY_DN48618_c2_g1_i18
• Name Transcript: Ll_transcript_368216
• Sequence: AGTGCCATCCCTACCAACCACTCTTGATCATATATAAGAGATGAGGGAACATTACATAGTTTGAAAGGTTGTATTTATCTCTCTCCTCTTTGTTCCGGAG TTAACCCTCCATTTCCGCAAGTGGGGCAACTCTTTAGCCCAAATCCTTGGCACTCGAAACATTTCCATCTTTCAAATATATTTCCATTCTTTTTATTCCT CCCCGTCCCCTGTTATGTGATAATTCCAATATTGTTATATTTATAAAATTTATTCTTTTGAATAAAATGTTTTATATTTGTAATAAGATGTTATCCTTTT ATTAGAACTAACCTTACATCCAGGGCATTCGGTGGCTCCTGTTCCTCGGCAAGTTTTACAAGCACTCAGAATCTGCACCACTTCTCATCACAATCTCTTT CAAATATATGAATGATGCAATAAGTGGACATAAATTGAAACATACCGAGTTAAGTGAAGCAGACGGTACGAGTCTTGGTTTGGGTGCTATAATTGTTGGG TGAGACAGGAAATGAGAAGGAGTGATCTGTTTTGGTAGCAGTGGAGGAGGATGAGCCGCTAAGCAAATTGAGATATGTGACATCTTCCCTCACTTCAGAT ATGTAACAGCTATAACAGATATATATGTAATAGCTAACAACTTCAAAGGTTGATATTAATAGATGAGGTCTTATTGTGTGTGTGGTTCATATTTTTACAT TTTTCTTTATCTTTATATATTCAAATAAAAAATAGAAATAAAAAGCGTGGAGCGGAACCTCTCTTTTCTGTTTTGTGAAGATGACGTCACCATCATCAGA TGATGAAGTGCGCCCTGAGAAGTTCAGGCTGTATGAAACTCGAGCGAGATTATACCTGATCGGGTGTGATCGGAAGAAGAGATTGTACCGTCTCCTCAAA ATAGATCGATCAGAACCGTCAGATCTGAACATAAGCGAAGATCCAGTCCTGTACTCACCGCAAGAGATAAACAACCTTCTTCAACGCATCTCTCAAGGTA ACAAGGCCACCGGTGGTCTCACTTTCCTCGCTAATGTTTTCGGAATCGCCGGTTGCATCCACTTTCTTGAATCCTATTATCTCATTCTTGTTACTAAGAG AACTCAAATTGGTTCCATTTGTGGTCACCCTATCTATTCCATCAACGACACTCAATTCATTACTATTCCTCATCTTTCTATTCAATCCGATTTAGCTCAC TCTAAAACCGAACTTCGTTACAAAAAACTCTTATCTAGTCTTGATTTGACTAAGGACTTTTTCTTTAGTTATACTTACCCTGTCATGCAAAGTTTGCAAA ACAATATCTCCTTCGGACAACAAGGCATGCCTTATGATAATATCTTTGTTTGGAATGCTTACTTGACACAACCTATTCGATCAAGATGCAAAAACACCAT TTGGACTATAGCTTTAGTTCATGGCCATTTTAGGCAGAATCGTCTATCAATCTTTGGGAGGGACTTCAGCGTTTCTCTGATTTCTAGACGATCTAGGCAC TTTGCTGGGACACGTTACTTGAAAAGGGGAGTGAATGACCGGGGGAGGGTTGCTAATGATGTTGAGACAGAGCAGATTGTCCTTGTTGATGAAGCTGGCT CCTGCAAGGGAAAAATGAGTTCAGTTGTGCAAATGCGTGGCTCAATTCCACTTTTCTGGTCACAAGAAGCATCGAGATTTAGCCCTAAGCCCGACATAAT CTTGCAGAGGTATGATCCCACATACCAGGCAACAAAATTGCATTTTGAAGACCTTGCTAAGAGATATGGCAATCCAATTATTGTGCTTAATTTGATTAAG ACTGTTGAGAAACGGCCTCGAGAAATGATGCTGAGGCGTGAATTCGCAAATGCTGTTGGCTATCTAAACCAAATTCTACCTGTAGAAAATCATCTTAGAT TTATTCATTGGGACTTTCACAAGTTTGCTAAGAGCAAGTCTGCCAATGTTTTGGCAGTTTTGGGAGCTGTGGCAAGTGAAGCACTTGATTTAACAGGTTT TTATTACAGTGGCAAACCCAACAACATAAAGAGGGCTGACAAGAGCAACCGAACAAGCACAGGAAGGGATACTTCGCTTAGAGATCTGAGAGCTAGCTCT GGAGATCTTGCAAGGATTGGAAGCAGTAATGAAATTCTAAACTCTGTAGTTAATCGAGACAGAGAGACTGAGATGAGTCATCAGAATAACAAAGATAATT TTAGTAGTGATGCACCACGTTTTCAGAGTGGAGTTCTCCGTACCAACTGCATTGATTGTTTGGACCGTACAAATGTCGCCCAGTATGCTTATGGTCTTCA GGCTTTAGGACGCCAGCTCCATGCAATGGGTTTGACTGATGTGCCAAAAGTGGATCCTGATAGTAGCATTGCTGCAGCTCTAATGGACATGTATCAAAGT ATGGGTGATGCTCTTGCCCAGCAGTATGGTGGTTCTGCAGCTCACAACACTGTGTTCCCAGAAAGGCAGGGAAAGTGGAAAGCAACAACACAATCAAGAG AATTTCTAAAATCCATAAAACGATACTACAGCAATGCTTACACTGATGGAGAAAAACAAGATGCAATAAACTTGTATTACCCCTTCCTCTTATTTTATCA ATAATTTTCCTTTCCTTTTTCTAGGTGGTATTCATAACTCTTCTTTAATTTGATAGTTTTAGTTTTCTGTTGTTTAAATAATTTGATATTAAGGTTTCAT CTCAAAACCAATTAATAATGAGAGTAGTAATCCAACATATATTTACACCATGCCTATGGTTAGGAGCATGAGGCAGACGATATGAGACTTACTTCCCAAC ATGCCCCCTCCACTGAAGTCTGTCAGATTAGGCAAAGAGTTATCTTTGACCCATGATGGAAGGGCATTTTTTGGCCTGTGCCTATTATTAGGAGAATGAG GCAGACAATGCGGGACTAACTTCTCAACATGTCTATTCGTCAATCCTGTCTTTAGTCTTTGTCTTCAATATTAATTGCATTGTTCTATTGCCAGATTTTT AGGTTATTTCCAACCACAGGACGGAAAACCTGCCCTCTGGGAGCTGGATTCAGATTATTATCTCCATGTATCTGGGACAGGGGATGATCTAATCCCTGAG AGGTGGTGAGTCTTCCTTGTTACTTTATGAACGGGTAGTAAAATCCTTTGGCTTTGGGCTTGGAGTTTACTCCTCTCGGGAAGCATTTTTGTCTTACTTT TCCTGTATTTTCCTTCCACTTTTGCAGTTGTGTCCTATCATAAAAGATTTCCAC
• Tissue: pods
• Gene name: LI_gene_162639;
• Additional information: details;

Expression of Ll_transcript_368216

FPKM

• PAB: 0.3
• PNAB: 0
• PS1: 0
• PS2: 0.6
• PS3: 0
• PW1: 0.5
• PW2: 0.9
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_368216

• Blastp: Phosphoinositide phosphatase SAC1 from Arabidopsis with 78.23% of identity
• Blastx: Phosphoinositide phosphatase SAC1 from Arabidopsis with 77.89% of identity
• Eggnog: Phosphatase(COG5329)
• Kegg: Link to kegg annotations (AT1G22620)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019465464.1)
• Pfam: SacI homology domain (PF02383.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;