| Id Trinity | TRINITY_DN48691_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_369003 |
| Sequence | CTTACCTTCTACACGTGCTTCCTTTTCACTAATTATTCGTTGCACTTATTTCCTTCACTCTCTCTACGAATTAAGAACTAAAAATGGAGCCGCTGCTGAG AGGCGAAAACAGTGGCCGGAGAGACCGGCCGCGGGGGTTACACCGCCGCTCCGATGCTCTCACTTACGGCTCCAATTACGAGAAAGCCGCCGCTCTCGTG GATCTGGCTGAAGATGGTGTTGGTCTCCCTGAGCAAATTCTTGATTCATCAAGCTTCCAAACTTATGCAAAATTTTATTTCATATTCACTAAATTCGACC TCATCTGGTCTCTTAGTTATTTTGCTTTGATAGTCCTGAATTTCCTGGAGAAACCTCTATGGTGTGAAAACAATACCACACATTCTTGCAAGGATAGAGA GTATTTCTTTTTGGGAGAGTTGCCATACCTTACTGCTGTTGAATGTATTATTTATGAGGGAATAATTCTTTTTCTGATAACCATACACACTTTCTTCCCA ATATCATATGAAGGATCCCATATATATTGGAAAAACACTACTAGTCAATTGAAGGTCTTTTGTCTATTAGTTCTTGTTGCTGATATGCTGGTTTATATGC TGTATTCATCTCCATTGGCTTTTAATTTTCTACCTTTCAGAATTGCACCTTATATCAGGGTTGTTCTTTTTGTTCTGAACGTTAGGGGGTTACGGGAAAC CGTCATTATCTTGGCTGGAATGCTTGCCACATACTTAAATGTCTTGGCTTTGGGGCTTCTGTTTCTTCTTTTTGCAAGTTGGGTGGCTTATGTGATGTTT GAAGATACAATACAAGGGAAAACAGTATTCACCTCCTATGGTACTACACTGTATCAGATATTTATTTTATTTACCACGTCCAATAACCCAGATGTTTGGG TTCCTGCCTACAAGGCTTCACGGTGGTATTGCTTATATTTCATTCTCTTTGTGCTGTTGGGGGTTTACTTTGTTACAAACTTGGTTCTTGCCGTTGTTTA TGACAGTTTCAAGAGTGAGCTTGTCAAACAAGTTTCTGAGACGGATCGTATGAGAAGAACCATGTTGGAGAAATCTTTTGATTTCTTAGATACAAATAAT GTTAGATATCTTAACAAAGATCAATGCATTAGGCTCTTTGAGGAGCTAAACAAGTACAGGACTTTGCCAAATATCTCCAGGGAAGAATTCGAGTTGATAT TTGATGAGCTGGATGATACTCATGATGTGAAGATCAATAAGGATGAATTTGCTGATATTTGCAATGCCATTGCTTTAAAATTCCAGAAGGAGGAATGCCT ATCTTACTTCGAGTATTTAGCATTCTACCATTCTCCTACCTCAAAGAAATTGAAAGCCTTCGTGAAGAGTCCCATGTTTGGATACCTAGTGTCCTTCATT CTCTTGCTGAATCTGGGCGCTGTTATTGTTGAGACAACGCTTGATATACAAAATAGTTCTGCTCAAAAGGTGTGGCAAGTGGTCGAGTTCATTTTTGGGT GGATATACGTAATAGAAATGGCTCTAAAGGTTTATTCATTTGGATTTGAGAACTACTGGAGAGATGGTCAAAACCGCTTTGATTTTATTATCACGTTGAT AATTGTCATTGGAGAAACTATAACTTTTGCTTCGTCTGATGGACAGACTTTTTTTTCAAATGGAGAATGGATTCGTTACCTTCTTCTTGCAAGAATGTTG AGGTTGATAAGGCTTCTAATGCATGTCAAGCAATACCGAGGCTTTGTTGCAACTTTCTTAACTCTTATACCAAGTTTGATGCCATACCTTGGGATCATAT TTTGTGTCATGTGTATTTATTGTTCACTCGGTGTACAGACATTTGGCGGAATGGTTAATGCTGGAAACCCCAAATTGGAAGCAACAGATCTTGCTGATAA TGACTATTTGCTTTTTAATTTCAATGATTATCCAAATGGAATGGTGACACTTTTCAATTTGCTAGTCATGGGGAACTGGCAAGCATGGATGCAGAGCTAC AAGGAATTAAGTGGGACTTCTTGGAGTTATGCATACTTCATTAGCTTCTACTTGATAACTGTTTTGCTGCTTTTGAATTTGGTTGTTGCTTTTGTCTTGG AGGCATTCTTTGCTGAAATTGATATTGAGTCATCAGAAACTTGTGATGAACAAGACAAGGAAGTTGAAGGAGATAAATTGCGGAGACGGTCTGTCGGCAC AAAAACACGAAGCCAGAGGGTTGATGCACTTCTTCATCATATGTTGAGTGCTGAGTTATGTCAAACTGAGTCTTCCAATCCACCAAACTGAGATAAAATC ATTTTCAAGGTAAAACAATGAAACTTCACAAATATATATAGATTTCAAATTCCATTGCTAGTAATATAACTTTTCCTAGCTTTCTATCCTTCAACTGAAT ATAACATCAATGATTTAGTTTAGATGATAGGATAGTGTTTTGGCTATTATAGGAGGGTTCCTCATCCTCAGTTTCTGTGCTTTGGCTCTTCATAGTAATT CTATATTTTTTGGATTGTCTCTGCAAGAGCATATTCTTCTATCTGGGTTTGTGTTTTCTCAATTCTGTTTGAATAAAATTTCCTGCTACAAACATGTTTC GAAATCCGAAATACATTATAGCACCAAGCATAGGGTTTATATAATACATATGCAAGAAAATTACCATGCTGCACATCTAGAATGCTAAGGTACCAGCTTC AGGTCCTATCTAATATTTAAAATCGGTTAATCGCATGTGCAGCTTTGTGAGTGTAATCATGTTTCTGGGATCTAAAGTTGACCATGCTTTCTTCACACTT GGGAAAAATCAAATAAGTAAAACAAAGGAGGGAAAGAAAGAGTGAAAAATCATGATGTTATTTTGATGGGAAATTGCAAGCCCCTTGGTTACTGATGAAA ACTTAAAACTTAGTTCTGCATATGCTTGCTCTACTACACTCATGGAAAATGTTGTGAATTTGTGATGATATTGATAGTCAATACTCAATAAACTGTACAC TCAAGTTATATGGCCACTTTTGTTTCTAATTATGAGCCTGTTTACTTAAACAACTTAATTAACCTCTCATTCGGTTTCTTTAGCACGCGAAAAACAGCTT ATAGGAAAAGTCATAAACTATATTCGTAAGATGTTTTCGTAAGTTTAAATAAGTTCTTTGTAGGCTTTTGCAGAAGCCTTCTTTATGCCCAGAGTCATGT CCTCTCATTGAGTTTCCTTGTATTATTTCAGGTTGTAGACCGGTGCCAATGCAGTATCTTATACCATGGCAAATCTTATTTTCTATTGTTAACAATGCAC ACAAGAGTCCACCTTATCGTGTGAAATTTGTGCACATTTTCATGTGCTTTATGATTCATGCTATTATGCTGTTTCAGCACATGATAAATGCTTTGATTTG CTTGTGCTAAATGGGATTACATGATCATAGATATGTCTTATTTATTCTGTGTGTTGTAATTACAACCTTTTTCTTTATTCTTTTAATCATGTCCAACTTT TTCTTGGTACTATTAATGGTATTCTCTCATCAACTTTGATTTGTACTGCCGATAGAACTAATAAAATATCATAAGGTGGGAGTTTAGAATAATATATTTT CGAGTATCAAAAGâBLAST |
| Tissue | pods |
| Gene name | LI_gene_163278; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_369003
| Blastp | Two pore calcium channel protein 1 from Arabidopsis with 67.8% of identity |
|---|---|
| Blastx | Two pore calcium channel protein 1A from Nicotiana with 67.57% of identity |
| Eggnog | Two pore segment channel 1(ENOG410XZT8) |
| Kegg | Link to kegg annotations (AT4G03560) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019437005.1) |
| Pfam | Ion transport protein (PF00520.30) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |