Id Trinity | TRINITY_DN48699_c3_g3_i1 |
---|---|
Name Transcript | Ll_transcript_368284 |
Sequence | AAAAAAGAAAAAAAGATCCCAATAAAATTAGAAAAGCGGTAAACTGAAAATTTCAATCATGAATACCCTCCCTCGCTGACCCCAAATTTTATTTGTATTA TGCCCCCAAACCCCTTTTCTTTGTTTCTCTCTCTATCAATGTCTCTTTCTCGCTCTAAAATCTCAAATTCCAAAGTAACATCGAAACGCCATGACTCTTG TAACCTCTACGGAACCAACTGATTCGTTTCATAGGTTTTCTCCCACATTGGGAATTCCTTGTTGACTTCTTTTGCACTATTAGGTTTCTTTTTCTCGATT TGGATTGAATAGGCGTTTTATGCGTTTGGTGTTGCTTTCACTTTACTCTTTAGCATTTGAGTACTTAGGGTTTTGTTTGAAATGAGAGAGGGTTTGAGAT CTCGTACTCGGTTGGGGAATGATTCCGTTGATAGAGGAGTTGTTGAAAGGGGCAGAGTGGAAAAGAACAGTTGTGATTCCAATGTTGAGGGTTCTTCTTC GCTGCCGCAACAAGAGGAGGGGTTGAACTTAACGAATGATAAGATGGACGAGGTTGAATGTGTGGTTAGAAAAGAATGTCGTTTTGATTTGAACGAAAGT CCGAGTGGGAATGCTGATTTAGCTAATGATGTGATTGATAGGGCTTGTAGTAGTGGTAGTGGCGGGGGCAGTGTTGGAGAAGCTGATGCTGAGTCAGAGG TGAGTAAAAAAGAAGTGAGTGATAAGGGTTGTTGTAGTGGCGGGGGTAGCGGCGATAAAGAAGCTGTTGAGACATATAAGAATAAAAAAGGAGTTTCAAA TGATAGCGTGTTGGTTGGTGGTCGAGTATTGCGCTCTAGATCAAAGAGGGGAGATGAGACAAAATCCTGTAATGGAGAGAACAGCAGTGCCCTTCCCGGG AAAAGTAAGAAAAGTGGTGGGCTTGAGAGGATAGAAGTTAAGAACGAATATGATGAAGCTGATGAAGTTGTTAGTGACTGTCATGAGAATGAAAAAGTTA GGCTGAAACAGAAAGGGGGCGAGAGTAATTTGAAAAGGAAGCGTGGTAGGCCTCCCAAAATAGAGGCGAGAGAGGAAGATCAATTTGTTGTTCAGTTGCC ACGTAAGCGTGGGAGACCTCCCAATATAAAGTCCAATGAGCAAGGCCAAGCAGGTGATCAATTAATACGTAAGCGTGGAAGACCTTCCAAGGTTGGCCTA CAAAACCAGCTCCCAGAAATGGCACATAATAGAAAAGGAAAGGTGGGCTATCAAAATGGTAAAAAAGGTTTTCCTGCAGTCAAGAATAATAAATTTGTGA AGGTTTTGAAAACTGAAAACAATGGAGTAGCCTCACCAGTGACATCAAATACAGTGAAACCACCTGTTGGTGATAAAAGTGTACGTAGCAAGCATAGAAA GCTGGTGAGGGAACAAATAATGGAGCGTCTCTCATCTGCAGGCTGGACAGTTGATTATCGACAAAGGAATGGAAGAGAGTACCATGATGCAGTGTATGTT AGTCTTGATGGAAAGACACACTGGTCAATCACCCTGGCTTACAATAGACTTAAAAACCATTATGAAGCTGGTGATGGTGAAGGTAAGGTATATGGACCAG GTTTCAAATTTACTCCAATACCAGAAGAGGATTACAAAATACTAACTAAGGTAATCAGCAAACAAAGAATTGATAAAAATAAACCAAGGCCAAAGGGGGG AAAGCACAGAAAGACAGTTGATGGAGTCAATAGAAAAGTGAAAAAAGAAAAACTGGGTTCTGGTGCAGGCAAGGGGAAAATTAAAAGGAAACGGACACCT CAGGAAGCGGACAATGCGACACCAAGCAGAATGTCAGTCATGGTCAGGGATCATAAGCGACACAAAATGCAAAACAAGAAGCGATGTGCTCCATTGGTTC GCAATGCAGAGGAGGAGATAGATTCAGAAACTGATGGCTATGTACCGTACAATGGAAAGCGAACTGTGCTTGCCTGGATGATTGATTTGGGAACAATTGT GCAAAACCAGAAGGTTCATTATATGCATAATAGAAAGGAGTTTGCGCCAATGGAGGGTAGGATAACAGGAGATGGCATTCATTGTGGTTGCTGTAATGAA ATAGTAACAATTTCAGACTTTGAAGCTCATGCAGGAAGCAAACTCTCTGAACCACTTAAAAATATATATACAGAGGGAGGAACTTCTCTCTTACAATGCC TGCTAGATTCATGGTTTAAACAAGATGAGTTTGAACGTAAAGGTTTTCATTTTGTTGATACCGTGGGTGAAGATCCAAATGATGATACATGTGGTGTCTG TGGAGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCGACATTCCACCAAAGCTGCTTGGATATAAAAAAGTTCCCATCTGGTGACTGGCACTGC ATTTATTGTTGTTGCAAATTTTGTGGGTTGGCTGAAGAAAGTTCAAACCAAAGTGACAGCAATAATGATTTTACTGTGTCTACATTACTGACATGCCATT CATGCCAGGAAAAATATCATAGATCTTGTCTTGAAGCAAATGGTGCCAATACTGATGATTCCATAGATCCCATTTTTTGTGGAAACAAATGTGATCAGTT ATCTGAGAATCTTAAAATGCTTCTTGGGGTTAAACATGAAATTGAAGATGGATTTTCTTGGTCTTTTATTCGACGGTCAGATGTTGGTTTTGACGCTTCT GAGATAAAACATGAGATTGTTGAATGTAATTCCAAGCTGGCTGTTACATTAACAATTATGGATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGA CAAACTTGATCCACAGTATTCTATACAATTGTGGATCAAACTTCAAAAGACTGAACTATAGTGGATTTGTCACTGCAATTCTAGAGAGAGGTGACGAAGT AATTTCTGCAGCTACTATAAGGATCCATGGGAACAAAGTAGCAGAGATGCCATTTATTGGGACCCGTTACATGTACAGGCGACAAGGAATGTGCCGCCGA CTTCTAAAAGCCATTGAATGTGCACTCAGCTCTTTAAATGTTGATTTATTGGTCATACCAGCTATCTCAGAACTCAGAGAAACATGGACGTCTGTTTTTG GGTTTGAGCCACTTGACTTGACAAGCAAGAATTTAATAAATAACATGAATCTTGTGGTATTCCCTCATGTAGATATGTTACAGAGAAAGATACCTAAGCA TGAAGTAGCTGCTGAGAATCTGATTCCTATAGAAGTTTCTAATCACCAGGATAGTCATACAATACACAAGGTAGCAAATAGTTGTGATGGGGCGGGCTCA TCTGGATCTGACTTGATCATTTCTGCTGGGATCCCTCCCTCTAATGAATGTCAGATAGATGAATCTTGTTTTCAGCCTCCTAAGGGATCATTGAATGATG CACCTGTCATCACTAGCAACACTATAAATCATGATAAGTCTTCAGATGTCACAGGTCAAGTTGTATGTCAGGCAGTTGATGAAAATATGGCAGTGGAAGC AGCAAATGTCCGTGATTGTGCCAGATCGGACCATGATAAGAAGTTAATAGATTTGGATAGCCAGTTGAACAAATGCTGTGTTACTTATGAGGAAAAGCAA TGTCTTGGTGTGGCCCATATTAGCACTGAAGCTGCCGAAGGACATGAACTGAAAGGCAAAACTGACTATGTTCAGCCATACTTCAAAGGATCAGAAGTAC AAGCTGAAGCTGTTAATGGTTGTGCTTCTCATTGTAGACCCGACACCGGCAGTGATTGTGCCCCTGGTGAAGCTGTTTTCACAACAAATGTAAAAAATAA CATTACTGAAGATTTGCCTGTGGCTAATTGTGAAAAAGATTCCAGTATGGTTAGTGTGCCGAATGGGAATGAAGCAGAAATATGTTCAGCCAAAGCACCC AATCCTGGAGTTTGCCAATCCATAGTGGCATCTTCAGGCTTTCCTGAGAACACTGCTGATGGTGTCAATGAGAGAAGTGAAGCACCAAGTGTAGTTGAGG TCAATTTCCTTCCTGCTGATAAAGGCATATTTGCGAATACTAAGCCTGAGATTGCAGGGTCTTCAGAGTTAGCTGAGCCTGATCTGCAGCTCGATCAAAC TGCAAGGAGCAACCCTCCATCATTGTGTACCCCAAACACTGCTTCTGGTGTGAATCCTCGTTGGGCATCGTCTGGAAGTACTTCATCTGGTAGTACCGAG GCAATAGTTCTGTCAAACCAAGCCGGTTGATTTATGTGTTCCATTTGTAGTTTTATAAGTTGGTTACCTTTTGATATAGGGATATCTAGCAATGCGTTTT AATAGGTCGTAGATATCATGAACCATTGGTCTTGTACTTAAGGAGGTGAGGTGCACCTACTTATTTGATGAGGGAAGAGTGCCATAAGGGTCGTTTGGGT TCTTGTTCCCCATAGTATAATCATTGTGATGTAAATGGAGTAGAACAATGCTTTTGTTATAAAGAGCCTTTATTTTAGGTGCTAGAGATTGACATAATTG AAGGAACATGGACCTCGTTTGTAACAAATGAGCACCTCCTTAAAAAACCATAATGAATGTCTTTATCTTGCTAAGAGAAATATAATCTAGTCATTACACT CTTGTAGCG BLAST |
Tissue | pods |
Gene name | LI_gene_163349; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_368284
Blastp | Increased DNA methylation 1 from Arabidopsis with 36.56% of identity |
---|---|
Blastx | Increased DNA methylation 1 from Arabidopsis with 36.56% of identity |
Eggnog | PHD(ENOG410Y0W7) |
Kegg | Link to kegg annotations (AT3G14980) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019428395.1) |
Pfam | AT hook motif (PF02178.18) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |