| Id Trinity | TRINITY_DN48747_c2_g2_i2 |
|---|---|
| Name Transcript | Ll_transcript_419395 |
| Sequence | TGACAACCACTTCACTAATCTGGAGTCGGCATTGGTTGCTCTTGGCTGCAAAGAGTGCATTCTGCCTATGACAAATCTGTCAAAAACAGAGTGTTGCGTG ATACATTGACTGAATGTCGTGTGATGTTAACTGAGAGGAAGGAAACTGAGTTCAGAATAACGGATCTAGCACAGGATCTTGGTAGTTTTGTTAAAGGTTC TCCTGAACCAGTATGAGATTTAGGGGGTGGATTTGAATTTGCACCAAACATGACTCAGGTGAGTTCCATTAGTTTTTTAATCCTCATGTTATTTTTATTG GGGGTATAGCTAATACTATCTATGCAGCACTAAGACTGCAAAGAATTATTTCCATATTGCGTCTCACATGTATTGTTCATGGATGATAGAAGCTTTTTAG ATAGTATTCATCCATATTTTCATTTATGTGTTTTTTTCATCATCAACATATATGTTGTGTACATATCTTATATATATACGCATGTTTCCTAGGTTCTTAT CTTATCTTTTTGTCATATTTATACGCATTCTTAAACATGTTGTATCCTATATCTTGTTACTATTTATTCGATCTTTTTTCCGTTACTGCAGATGGCAGAC CCTCTCACTGCACTGGTGTATGTAGTTCAAGTGATGAACTTCTTGAAGACATTTATAACAAGAACATTGGAGGAAAGAATAAAACAAGGTGCTGCTGCAG AAAGTGGAGAGGCTGAGGAACACATAGTTGCTAAGGAAACTGCCTTAGATAATAACTCCTCAATTGGAGGAGAAAGTAAGAGTCTGAAAAACTCTTCTGA GAATCTAATATGCGATGGTGATTTGTACTGAAATATGTTACTAATTTAGCCTTTTTGTTTGTTTCATAGTTTGGTCTATCAATTCGAACGTGACATGGTA GAAGTGAGATTGAAGAAAGCTTTCAGTCCAAGAGTGTGGATTTTTGGTTAGGGAAAACTGTGCATTTTGAGAGGATAGTGATAAGTTGTGATGGTTATTT TTTTGCTAATATGAGAATGATGCTTGGTTTGTGCTTGTTTATATAAACCTTGGGACAATTTACTTGTTGGCTGTTGAGAATTGAGATGGTGACGCATTTT GTGAATTCATCATTTGTAGGACATTTTTGGAATGTTTCAATGTAGGTGCATCTAGAATTAGCTAGGGATTCTCAGAATGATTATCATATGATACTCTTAA TCAATAAAAAAAAGATGGTGATATTATGTTTCCATTAATTAAAAAAATTCAATTCAAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_163674; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_419395
| Blastp | - |
|---|---|
| Blastx | DNA mismatch repair protein MSH2 from Zea with 46.55% of identity |
| Eggnog | that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249) |
| Kegg | Link to kegg annotations (100279876) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_003549805.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |