Ll_transcript_420235

• Id Trinity: TRINITY_DN48794_c0_g1_i20
• Name Transcript: Ll_transcript_420235
• Sequence: CCAAACTCAAATATAAATATTTTTTTGGCTATTAAGTAGATGCAAGCATGATAAGAGAGTAATTGAGTATAGATTGTAATTCTCCTTCAATCTCTGGTTG GCCCAATATTGGAGATATGGGCCGGGTGCAGTAGAAACCCAAACTTACGTTTCACAACTTCATGCTTTTTAGTTCTTACAACCCTCAACTCTTGCCCTCT CCATTTCGAAAGGATCGTGTTTTCAAGCTTCTGCTTCTGCTTCTGCTCCAGATTCGTCAAGGCTCCATTGGGTATTCAAGATCCCATCCATCTGGTATGG CATTCATTGAATCATCCTTGTATTTCTTGAATTTCCATTTTTTGCATAACTGTTCTCGATTTTTCATGACCGGTGTTCAAATTAGGGTTTTGAGGTGAAT TCACTTCGATTCACACTCTTAATGTTGGATTTGGAAAATGGGGTTCACTGCTTCGTTGTTGTTTTTGTTCCTGTGTTGATTTTTATCTGAATTTTACAAT TTATCTTTTCTTTCGATGTTGTGTATTGAAGTTTTTATAGGAACAGAACCTTCAAATTAGCGTGTAAGAGGTTGAAGAACGTGGGTTACAAGCTATTCGT GTAATTTACGACTCTTAAAAGAGTTACAATAGAATCTCAAACAAAGGAATCGTTCTTATGAGCAGTTTGTGTATCTGAACGTGTGTTTCAGATAGGGAGT TTAAGGAAACGAAGTTCCACTACTTCGCCATGGAAATTAAGTGGCTTTAACAAGTTTATACTGTAAAGTTGCGAATTTTCCATGCTGTTAAAAGAGAGCT GAGTAAGGTAAATGCATACGTGAGTATATGCTGATCTTAATTTGATATCATGACACCCATGCTTTTTTATGATAGATGATGTCAAGCGCTTGGACAAATA TGAGCTTTCCAATCAAACATAGGAATATAGAGTGGGAGTGGGAGAATTGGGGTGGAGTTGTGGTTATTTTTTTAATAAAAATTGGAGATTCTTGCTCACT CTCAGAAGATTGCTAATATTCTGGAAAAAAAGGATGAGGAGGTCAAATTTAATTTCAATATTGTTATTAGCTATGGAGCATCTTGGAGCAAATGAGCAAT GGAGCTTATGGAGCATGGCTCACCTCATGGATTGCTCTGTTGGTTTGCTTCATAGTTTTGTTTTTATTTATTTTGTGAAATCATTAGAGTGATCATAATG ATAATTAGAAGTTTCAGGGTTTGGTGGTGCTTCAGAAAGTAAAATAGTTCTTCTTTGCTGACAAGCTTCCATTTTTTGTTTGTAGACAAGTTGTTTAACT TTTTCTATCAGACATGAGTGGCCGCTTTTCTCGCACGATTTATGTTGGTAACCTGCCTTCAGATATCAGAGAATCAGAAATTGAAGATATCTTCTACAAG TATGGCCATATTGTGGAGATTGAGTTGAAAGTTCCACCTCGCCCTCCTTGTTACTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCAATCC GGGGTAGAGATGGATACAACTTCGATGGTTGTCGATTAAGGGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGTCGTGGCTATGGCAG TGGCAGTGGTAGTGGTGGCAGCGGTGGGACCCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGG CAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTACCCGTGATAGTGAAGGGACTTTTGGCCTTGTCGATTACACCAACT ATGACGACATGAAATATGCTATTCGAAAGCTTGATGACACAGAGTTCAGAAATCCTTGGGCAAGATCCTATATTCGGGTGAGAAAGTTTGAGAGCAGTCG TTCAAGGAGCCGCAGCAGAAGCCGCAGTAGAAGCCGCAGCAGGAGCAGAAGTCCCAAAAGGAACAGGAGATCTTTGGAGCGATCCGTGTCTAGGTCACGA TCTAGATCTAGGTCACTATCTAGATCAAGATCTAGGTCAGCATCACCAACCAAGCCCTCTAGGCAAAGATCACAATCAAGATCTGAATCTCCACGCCAGG TATTTAAAGCTATTCAGTTACATGATTTAGAAGCACAGTCAGATTCTTGTAGGAAGTAGGGCAATGACTCTTGATCAAATGTGTTTCTAATAGAATCAAT ATGACTATATATTTGAGCAATTAAAGATATATACGATGTGGTCAAGACCAATTTGAGAACACAAGATATAGTCTAAGAAGATTTTCCTATTGCTATAGGA CTACAGAAATGGTCAACATTGAGCCCTGACCTATTTACATTAGTCTTGAATGTGCTTATTGAGCATATCCAAAGACTCAATGCCAAAATGCATGTTTTTT TGAGGATGTTTTATCCTAGTTGGAGAATTGGGAGGGGGATTAAATAGGAAGCTAGAAATATGGAGACATGTTTTAGAGGCATGTGGCTCTCCTATAAGTT GAAGATAGATGAAGAATATGGAGTCTAAGTTTAGCAACAGACGGACAAACTCTACTGTAGATGTAAAGATCAAAGATCATACTATATCACAAGTCGTTAG ATTTAAGTATCTTGTGTTAGTCATACAACACGGTTTGGAAATTGAGGGAGATGTAAACAATAGGGTTCAAGCGCGATGGATGAAATGACAGAGTGCATTA ACTGTCATATGTGATTAAAAGGTGTTCCTGAAGGTTAAGTGAAAATTTTATTACTGATATATGAGATTGAATATTGGACGTTATAATATCAACAAAAGAA TACTTCAATGTAGCATATATGAGAATGTTGTGCTGGATGAATTTTCCACATTAGACGAAATAAGATTATGAATGAATTTTCCACAAATTGAAGTTTCTCT TATTCTAGAAAATTTAGTAGAATTGTGTCTTAGGCAGTTACGATGGGAGCATATTTGTTGTCCCACAATTTATGTCACTGCATGTGCCATCACACGTGAT TGGTTAGAGAAATATTTAATAATTTAACTTTTAACTTCAATTTTTTTCCCAAGTAATCACATGAAATGACACATGCAGTGGTACAAATTGTGGAGGAGTT TATAAAAAAAACATAGGCGAAACAGTTAGAGGGGATTTAGATATTAATGTTTTGTTAATAGATTTGGTAAATCATAGAGTCGATCCTTGTAGTCTACCCT GCCTCATGGTACTTGGTTGTTGTTGTTGAGTTATATTACTTGAGTATTTAATATCAACTTGACTATAAATTAAAAGAGTTAAAAATAAAAAAACTTGCAT TATAAAAGATGTCTTCCCTATTTTGTACACTTGGCTTGTCTGTCCTTTGTACAGCCTAGTTTATAAAAAGCACCAGTTTGAAAGTTCAAATCAGAATTGA ACTTGTGTCAATTTCTTCTATTTTTTTTACCAGAACGGAGTAGTTAATCACATGTTTTTAAGTAGTTTGCGTATTTCTATCTGCTTATACATGATTTGTC AAGAAATGAGGCAAGAATCTTAATAATAGCATGTAATTTTTTGCAGGTGCTGTCAGGGAGTGGTTG
• Tissue: pods
• Gene name: LI_gene_164008;
• Additional information: details;

Expression of Ll_transcript_420235

FPKM

• PAB: 0.1
• PNAB: 0.2
• PS1: 0.3
• PS2: 0.4
• PS3: 0.3
• PW1: 0.4
• PW2: 0.3
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_420235

• Blastp: Serine/arginine-rich splicing factor SR34A from Arabidopsis with 83.92% of identity
• Blastx: Serine/arginine-rich splicing factor SR34A from Arabidopsis with 82.41% of identity
• Eggnog: Rna-binding protein(COG0724)
• Kegg: Link to kegg annotations (AT3G49430)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019437311.1)
• Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;