Id Trinity | TRINITY_DN48948_c1_g1_i3 |
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Name Transcript | Ll_transcript_435843 |
Sequence | GTTCTTTTCTAGCACATCTCCTGATCACTATCTTCATTCTTTTATTAATTAAGTGTCTTTGGGGTAACATATGCTTTTCTAAGATAGTTTAAAAAAAATA TTTGTTCACATTATTAAAAGTATAAACATGTAATATTTTCCTTCTTTGTTGTCTCTCAAAACTTCCTGATAATGATAGCATCTGAAGTAAGCGAGATCCA TGGGGTTTCATTAGAATTTTCAGAAGAAAATGGAACAACTACTCAAACGACGATGGCTACAGCATTGAGCATTTCACCAAACCAGCAAGGGGTTAATGTT ACCCCCCTTAGTGAGCCAGGATTATCCAGAGCATTAAATGTTTCACTGCCCCCTATGCACGTCAATGAGCAAGTGGAATCTTCTGTTTTACAAGATACAC AAATACATAGCAGTGGAACTGGTTCAAAAAAAAATTCTGAACCCACAGTTTGCGGAGGATCTTCTGGAACTACTACTAATAAAAAGAAAGAATCAGTTCC TCACAGTCAAATTGGGCATCATGGCCAGAGAACTTGTTTTAGTCCACACTGGTCGACTAAGGCTGTTGAAAAGGCATTGAAGGAGGGTACTGTTTTTAAA GCTCTCTTTCATGTCAATGCTCACAATGCACTTGAGGCCTACTGTAGAATTGATGGAATGCCAACAGATGTTCTCATCAATGGAATCCCTGCCCAGAATA GAGCTGTGGAAGGTGATATTGTCGCAGTTAAGATTGATCCTCCGTCATTGTGGACAAAAATGAAAGGGCCCAATGTGACTAGGAACAATACCGCCACACC AGAAGGTTGTAACCTCCTCACAAAAGATGATAAAGTGGCTGATAATATTTGTGAAGGAAAAGGTAAATTAGATGCTGGGTTTGAGTTTGCCCAATACAGA AGTTCCCCTAGTCAAAACCAGGAAGATGTTGATCGCAAATCTACCTCTTCTAGAAGCAATCATTTTCATGAAAAGGGGTACGATTATAAGGGTAATGCTT CCATGGGTTCAACTAACCATGGAATAGCTGGCCGTGATACCATTGATGGAATGCATTGTGCTTCTTTGGATTCCTTGGTGATCAATTCCTGTACTGAAAA GGATGTGGTAATTAATGCTGTAGAAAAAATGTGTTTGTTGGCTAATTCCTTTTCTTCTAAAAGACCAACTGGAAGGGTAGTTTCTATTATTGAGAGGTCA CCACGTCGAGAGGGTATTATCGGCCATCTATACATGAAGCATTGCACTATTTTCAGGGACATAAGCAAAGAAGATGCAAAGAAGAATAATAACAATGTTT CTGAGCATGAGTATATCCAGCTGATACCAACTGATCCAAAGTTTCCAAACATGATGGTTCTTGTTGAAGAATTACCGAAGTGCATTAAGAAAAGAGTGAT AAGTGGCGATGTGACAGTTGAAATGGATCTAGTAGCTGCACAAATTGATGATTGGGTTGAAGAAAGTTTTTTACCTGAGGCTCACATCTTGCATGTTTTT GGACGAGGTAGTGAGGTTCAGCCCCAGTTAGATGCAATTTTGTTTCAGAATGCTATCTGTTCGTCTGAATTTGCACCTGAAGCTTTGTCCTGCCTTCCAT GTGTTCCTTGGGAGGTGCCACTTAAGGAAATTCGGAGTAGAATAGATCTAAGGAATTTATGCATTTTTACTATTGATCCTTCTACTGCCACAGATCTGGA TGATGCACTGTCTGTTGAAAAGTTACCTAATGGAAATTATAGAGTTGGCATACACATTGCTGATGTGTCATACTATGTTTTACCTGAGACAGCCTTAGAT AGTGAAGCTCAGTTAAGGTCGACAAGTGTTTATATGTTACAAAGGAAGTTACCTATGTTGCCTCCACTATTATCAGAGCATATAGGTTCTCTTAATCCTG GAGTGGATCGACTTTCAGTTTCCATGCTCTTGGATATAAACCTTGTTGGGGATGTTGTTGATCGTTGGATTGGCCGTACTGTTATACAATCTTGTTGTAA GCTTTCATATGAACATGCTCAGGACATCATTGATATGGCTATTGGTTCAAACATTTTGGCAGATGGCTATCCTAAAGTGTATGGCTGTTTTGAATTGCCT GATATTATTACATCTGTGAAGAGCCTTTATGAAATTTCGAAGGTTCTGAAATGCAAGAGGTTTATTAATGGGGCTCTGCGGCTTGATAACCCCAAAATTG GGTTCCGGTTGGATGAATATGGTATGCCTTATGATAGTATGCTTTCTGAACGGAAAGAATCAAACTTTCTTGTTGAGGAATTCATGCTTTTAGCCAATAT GACAGTTGCTGAAATCATATTTAGAGCTTATCCTGATGGTGCATTACTGCGGAGGCAACCTGAACCTAATATGAGGAAGCTGAGAGACTTCACGGCATTT TGTCAGAAACATGGTTTAAAATTGGACATATATTCTTCTGGCCAGATCCATTGTTCATTAGAGCAGATGAGGGAAAAACTCAAGGGTGATCCTGTGCTTT ATGATATTGTTATTTCCTATGCTACAAGGCCAATGCAGTTGGCTTCTTACTTCTGCAGTGGAGATTTGAGTGATAAAGAACATGAATGTTGTCATTATGC TTTGGCTGTCCCTTTTTACACTCATTTCACATCACCTTTGCGCCGCTATCCTGATATTGTTGTTCATCGGACACTACTTGCTGTTATAGAGGCTGAGGGG TTATATTTCAAGCATCAAAAGGCTTTACATGTTAACAAAGATTTGGAAGTGCATAAAAGATGTTTCACAGGTATCAAATTTGATGAAAATGCTGCGAAAT CCATGGAAGGTAGGGAAGCATTATCAGCTACAGCTTTGAAGCATCGAATTCCACATTCGGAAATACTTGCTGACATTGCGACGTATTGCAATCAGAGAAA GCTCGCTAGTAAAAATGTGAAGGATGCCTGTGACAAACTTTTCATGTGGGTTCTTCTGAAAAAGGAGGTCATATTTTCAGAAGCAAGAATACTGGGACTT GGTCCGAAATTCATGTCAATTTATATTCAAAAGTTTGCCATTGAGCGGCGCATCTATTATGACGAAGTTGAAGGCTTGACTGTGGAGTGGCTTGAGTATA CATCCACTCTGGTTCTTAGCATGTCTGCTACTAACAGGCGTGCATGTAGGAAGGGTGGCACTAATAAGTGGAGGACATTGGATGAAGTTGCATTGCTTAC TTGCCCATATAACCAAGAGGTTGCAATGGATGAATCTACCATCGATGGGGAGCTTGGTTCTAGATCAGTCAATTCACAGACTAAAATAGTCCCGGCATTT TTCCCACTAACGGTTCGTATTCTTTCAACAATTCCAGTAGTACTTCATGCTATTGGTGGTGATGATGGACCTCTTGATATTGGTGTGAGGTTGTACATGA GTTCCTATTTCGAGTAAGTTGGCAGTGTCATCGGTTCAGTTTGTGACCGATGAGTCTGATATGATGAACATGTTAATGCTTCCATTAAAAAGTGGAATGG ACTTCTGTTCAGCTCCATTGTAGATTAATTAATAGTGTATAGCTTGATAGACATTGGTTGGAAGGAAGGTTACTTGGTCTAAATTTTCTTTTCCTCTATG ATCATGCTTGATGCTGAACTTTGGGAGGTTCTGTTGTAGCTTCGGCCTTACCAGCTCTGTTTATTTCAGAAGCTTTATACTGGAATTGGCGCTTGTTTTT GTTGGCCCGTTCCATCAAGTTTAGTGTGTTCCATATTTGGTTCTCTTATAGAGAGGCCTAGTTCAATTTATACTTTATTTCTAGCTTGATTGTCCTGCAA CCCAATATTTTTTTATATTTTGGGTGGCTACTCTTGTACTTGTAATTTGGTCTGAGACATTTATGTTATTTTCTAATTTAGGTGAACTTTCGATTGCAAT GATTTGTGTACATGTTTTATATGGTGTGGAGTTTATTATTGTCACTGTTGGCCCTGTGGATCAGTGTGACTGTCTAAGACTATTATCAATGATT BLAST |
Tissue | pods |
Gene name | LI_gene_165304; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_435843
Blastp | DIS3-like exonuclease 2 from Arabidopsis with 49.39% of identity |
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Blastx | DIS3-like exonuclease 2 from Arabidopsis with 50.43% of identity |
Eggnog | 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs (By similarity)(COG0557) |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019456249.1) |
Pfam | RNB domain (PF00773.18) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |