Ll_transcript_437194

• Id Trinity: TRINITY_DN48973_c2_g1_i9
• Name Transcript: Ll_transcript_437194
• Sequence: AAAAAAAAGACTGATAACCTTATCCGCCACCATCAACTAGTTCTGTCCTAAATATCTCTTCAGTGTTTCACACTAACAAACCTCTCTTAAACCCTTTCAC TCTCTCTCGTGTAACAAGTATGCAAATTTCATTGACCAATTCAACCTTCAAGGTCCCTCAAACATTCCCATTTCACCAACCCTTTCTCACTGAGAAGCCA CAGACCCAGCAATTCCCCCTTCAAAAAAACCACTTTCATGTGAATGCCCTTAAAGGGTCATCACGCTATTTATCAGAAATAAGCAAAGCCATTGATCATG AAGAACAGTATCGACAAGCTAGGCAACAGGTTCAGCGTAAAGGTGTGGACTTGGCAGGAATTACCGTTGAGGGTGTCTCTATTGGTGGCCAAGAAACTTG TATCATTATCCCTGAATTCAAGTGTGCTTTTGATATTGGAAGGTGCCCAACAAGAGCTATTCATCAAAATTTCGTTTTTATCACTCATGCTCATCTTGAC CATATTGGAGGGCTGCCAATGTATGTTGCGAGCCGTGGTTTATACAATTTAAAGCCTCCCACTGTATTTGTGCCTCCTTGCATCAGAGAAGATGTTGAGC AGCTGATTGATATTTACAGGAAAATGGGACACGTTGATTTGAATCTTGATTTGGTTGCTTTGGATGTGGGGGAGACATATGAGATGCGAAATAACCTCGT TGTCCGACCATTCAGAACTCAACATGTTATACCCAGCCAGGGTTATGTAATCTACTCTATCAGGAAAAAGCTGAAGAAACAGTACACCCACCTCAATGGA AAACAAATTGAGAAATTAAAGAAGAGAGGCGAAGAGATTACAGACACCATATTATCTCCTGAGGTGGCCTTCACTGGTGATACAACTTCAGATTTTTATC TTGACCCACTTAATGCTGACGCGTTGAGAGCAAAAGTTCTTATAACCGAGGTACAACCCACTCCTTTAGTGAAATGAGTAAAATTACTTCATCACCGAGT AAATCCTTAGAAAGAGGTATTCCTAGTGGTGGTTCAGAAGTCTAATGTTGGATGGTGTCTTAAAATAAATAACCATGTGAGAAGTTGTTGCATAAAACGG CTCAAATTTTTTTCGTTCCTTAAACTAAATGAATTGCTAATTAAACTTTTCCACTCATAAGATTTTGGAGTTTGTTCTTTAAGCACATCAATTAACAACC TGAGCTACTGTCAGGGGAATTTTTTGTTAACCCTTTTCATATGTGATTGGTTAGAGAGGGCTTGAAGGAATGAAAACAGAGTGAAAAGGGATTTGTTGAT AATTTAGGGTTTGCTTTATTTGATGGATGTGCAGAGTGATTGGCGGGCCTTAGTTGTTGTGTATTTTTGTTATGTACAATTAATTGTAACAAGATATAGA TCAATATCCAGTGCAACTTAAACAATTTCCACAGGCTGTGCCAGTGTTTTTTATTGTACACCAAATGCTTCTTCTCTTTATTGTGTAAAGAGTATCAGAA CTAATAGAGCCTCCTAAGTTGGTATTGTTAGACTCTGAGTCTTGGTTTACTTTGAAGAATGGCAGGTTTGAAAATTTTCAAAATGCTACACCCTTTCTTT TTGTTTTTGATTGATTTGATTGTTGAGACTTCTTTAACAGGCAACTTTCCTAGATGATTCAACCAGCATAGAGCATGCTCGGCAACATGGTCATACACAT ATATATGAGATCATGGAGAATGCGAAGTGGATTCGCAACAAAGTGATTTTGCTGACTCATTTTTCATCAAGATATAATATAGAGGATATTCGTCAAGCTG CATCAAAATTGCAGTCCAGACTATCTGCAAAGGTGGAGATGGGGCTGCTGGTGGACTTGATTTCGAAGCTGAAAGGGCTATTCAGGGGGCTCTGCATCTG CTTATGTAGTGTAATAATCAATACATGGAATGAGGTCTTTGTCATGATCTTATAAGTGGAGATGAGAGACAACCTATGAAGCTTTCCGCATTTTCCTCCT ATGTATTAGGATAGTAGTGTAATTTGATTTATATGTTGGATTTTATACTGATTTC
• Tissue: pods
• Gene name: LI_gene_165499;
• Additional information: details;

Expression of Ll_transcript_437194

FPKM

• PAB: 0
• PNAB: 0.6
• PS1: 0.5
• PS2: 0.4
• PS3: 0.2
• PW1: 0.3
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_437194

• Blastp: tRNase Z TRZ2, chloroplastic from Arabidopsis with 64.66% of identity
• Blastx: tRNase Z TRZ2, chloroplastic from Arabidopsis with 64.89% of identity
• Eggnog: Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA (By similarity)(COG1234)
• Kegg: Link to kegg annotations (AT2G04530)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019457060.1)
• Pfam: Beta-lactamase superfamily domain (PF12706.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;