Id Trinity | TRINITY_DN49328_c0_g1_i2 |
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Name Transcript | Ll_transcript_484764 |
Sequence | GTTATGCTATATGCTGGATTGGTTATGCTATATGCTACATTGGTTATGCTTTATGCATACTCACACTGAATCACTCTCCCTTATTGGCAACTCAATAGTC AACACTCCCTCACCCTCATTCACTTCAACTCTTCAAAACAACACAATCAATTTCACTCTCATTTTCTTCCATTTTTCTCTTCCCATTCTCATTCCCCCTT TTCTCATTTCCTCCAATGGACTCATCGGTTAACGTTCACATTAAACGCCCTGCTTCCACCGTGTTCTCTTCCGAGGGGCAAAAAAGATTAAAAATATCGA GTGATAGCCTTCCATACTCAGAACTTGGACAAACTGAGCAGAAGACACCCGGGAAATCATCAAATGTTGTGGATTATAGCAATCCATTTGCAGTTACTGA TTTCCTCAATTGTTTAGACAGTGGGAAATTTGGAAGTGTAACAAAGGACATAGAGTCCCTTTTTACTCGAAAAATGCAAATACTGGGGACTTACTTTGCC AAATATCCATCACTGCTTGATCACTTAGTGAATGAGGTAGTGAATCATGAAGAAACCCATACGCTGGAATGTCAAGAAGTTGCTGATTTGGAGGCTAAGC ATGTTGACAAGCATGTTCCACCAGCACCATCATCTGTTGTGATTATTGATTCAGATGATGACGAAGATAGAGATCAAAAATCATTTCTTCCATTTCATAA AGTTGTGTTGCCGAATCAACCATCTCCTGCAGTGAAAATGACTGTATGTTTTTCACTGTTTTTTGTGATTCTCTAAATATGTGAACATTGATTGGCGATT TAACATTGACGTGCAGTGTATCAGTATTCAGTAGTATGTTCCCTCTAGTGGCGATTTAACTAACTGCGTTTTAACATTTGAGGCAGAAGATTATTGTTAA ATATTATTTGCTTCATATTATCTAAAAATAATCATTTACTTGCTGTTGCATTATTATTTGCTCTTAATTCTGTTCCTTTGAAGAATATATTGCCTTATTT ATTTATTAATACATAGTCCGAAGGACACTCTCAGCGTTGATGGACGAATAGTGTATTATGCCATATGGGTTTTTTGTTGATTTTTCAGAACATATTTTGT ACATCTTTTCAGATGCATTACATATGTATTGAGGTAGCTTCCTTTGTAAGATTCTCTGTATTTGGATGAGTCTGTAGCTATCTTTCATGATCAGATGCTG TTATATAGGTGCCTGTGATACTGTTCCTCCGATACAAACAAGACATGTGTCATGGTTTACCAATGAAAATAGAACATGTGTAACAACTATGGTACCTATC TAATTCTTGTTGGAGAACAACACCACAAGCACATATAAAATAGCACCTAAGTTTTGTGCTTTTTTATAATGTGACTTTTTTATTGGCATCCTTAACTATT CTATGTGTAATAATGCTTTACAGGAGTCTCATCCTCCCATTCGTTACAGTGAAGAAAATAAAGATCTAAAATTTGACACAAGTTTTTTTTATAACGGTAA CAATGGGAAAGGAAAAGGCAAGCATCTTGATGATAAAGGTAATAGTAGTCAAGACAAAGGTGTTTATGTTGGTGTCGAGGATGAAGAAGATGACCAGGTT GATACAAAGGATGAAGAACTAGATGATATTTGGCGGGAGATGTCAATGGCAATAGAATGCTCCAAAGATGTTTCTGTGAACCCTCTGCCAGATGAAGAAC CAAAAAAAGATGAGGATTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACCAT TTTTGAGTTCCAGTACAAGGTTAAAAGGAGTACTAGAACTTATGTGTCTGATTCATGGAATGCCAAAGAAAAAGATGCATTTGGAATTAAGATTGCTGGG GATGATCTCTTGGTAACTGATATATCAGCGCACCCTAGGCACATGAAACAAATGAAGCCTCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAACCTTG CAGGTGACCACCCTGGGGGCTGTATTTTGGCACATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAGAGTTTTCTAGGCAAGTATCC TAATGCTAGGCCTCTAGTGGTGCTTCCTAAGGGGATACTATCAACTTGGAAAAAGGAATTTCAAACATGGCAAGTGGAGGACATACCACTATATGACTTT TACACTGTGAAGGCAGACAGTAGATCTCAGCAACTAGAAGTGTTGAAACAGTGGGTGGAGCGGAAGAGCATCCTTTTCTTAGGGTATAAACAGTTCTCTT CTATCATATGTGAGAATGGAACTAACAGCTCATCAACAGCTTGCCAAGAGATATTGCTAAAGGTTCCTTCCATTCTCATTTTAGATGAAGGACACAATCC AAGGAATGATAATACTGATATGGTACATTCCCTTGCCAAAGTACAAACCCCTAGAAAAGTTGTACTGTCAGGAACTTTATATCAGAATCATGTCAAGGAG GTCTTTAACATCTTAAATCTTGTGAGGCCTAAGTTTTTGAAGATGGAAACTTCTAGGCTTATTGTCAAGCGCATTTTCAGTAGAGTACACATACCTTCTG GTAAAAGGGGCTTCTTTGATTTGGTAGAAGACACTTTGCAAAAGGACCCAGATTTCAAAAGGAAAGTAGCTGTTATACAAGATTTGCGTGAGATGACTAG CCAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCCGGTCTTGTTGAATTTACTGTGGTCCTCAATCTTACCCCGAGACAGAAGCATGAA GCTGACAAATTAAAGAAGTTATCCAGGAAGTTTAAGATTTGTTCTGTGGGTAGTGCTGTCTATCTTCATCCCAAATTGAAGCCTCTTGCTGAAAAATGTG GTGAAAATAGCATATCCTGTAACATAAAGGAATTGGATGATATCATAGAGAAACTAGATGTGAGAGATGGAGTGAAGTCAAAATTCTTTCGCAACATGTT AAACCTATGTGACTCAGCAGGGGAGAAGCTTCTGGTTTTTAGCCAATACCTCTTACCTCTGAAATACTTAGAGAAGCTAGCTATGAAATGGAAGGGTTGG AGTCTTGGGAAAGAAATCTTTGTCATCTCAGGAGAATCAAGCACTGAAGAAAGAGAATGCTCCATGGAGAAATTTAACAATTCACCTGACGCCAAGGTCT TCTTTGGCTCAATCAAGGCATGTGGAGAGGGCATATCATTGGTTGGGGCATCCCGCATCATTATTTTGGATGTCCATCTCAATCCATCAGTTACTCGCCA AGCTATTGGCCGTGCTTTCCGGCCAGGACAGAAAAAGAAAGTCTTTGTATATCGGTTGATAGCTGCTGATTCTCCGGAAGAAGATGATCACAGTACTTGT TTCAAGAAGGAATTAATTTCGAAAATGTGGTTTGAATGGAATGAGTATTGTGGTGATCGAGCTTTTGATGTTGAGGCAGTTCCTGTGAAAGAATGTGGTG ACCTTTTTCTTGAAAGTCCAATGTTAGGGGAAGATGTTAAAGCTTTGTATAAAAGGTAGACCGTGTCATTATGTTCATTGGACTTGGGAAGGCCAATGTC TTTTGCTGTTATATGAGTACTTATATTGCTGGATTTTTGATTCAGAACAAAGGAATTACTGAATTTGCTATCTCATTAGCTAGTTATATGTGACTCATCA GTGTGTTTAAAATTAAGCTGCAGTTGTTTAGTGTTAAATTGTCCTAACTTGTTAGTACTACAACAATCAGGTTAATCATGTGTCAAATATGGCCTCAGCT TATTATGTGTTGTTTGAAATTTTACAATTGCACTTTATTGAAAGAAATGAAGAGGTTCTTGTACATGCCTTTACTTAAAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_168439; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_484764
Blastp | Protein CHROMATIN REMODELING 35 from Arabidopsis with 64.14% of identity |
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Blastx | Protein CHROMATIN REMODELING 35 from Arabidopsis with 65.36% of identity |
Eggnog | helicase(COG0553) |
Kegg | Link to kegg annotations (AT2G16390) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019449406.1) |
Pfam | Type III restriction enzyme, res subunit (PF04851.14) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |