Ll_transcript_484767

• Id Trinity: TRINITY_DN49328_c0_g1_i4
• Name Transcript: Ll_transcript_484767
• Sequence: GTTATGCTATATGCTGGATTGGTTATGCTATATGCTACATTGGTTATGCTTTATGCATACTCACACTGAATCACTCTCCCTTATTGGCAACTCAATAGTC AACACTCCCTCACCCTCATTCACTTCAACTCTTCAAAACAACACAATCAATTTCACTCTCATTTTCTTCCATTTTTCTCTTCCCATTCTCATTCCCCCTT TTCTCATTTCCTCCAATGGACTCATCGGTTAACGTTCACATTAAACGCCCTGCTTCCACCGTGTTCTCTTCCGAGGGGCAAAAAAGATTAAAAATATCGA GTGATAGCCTTCCATACTCAGAACTTGGACAAACTGAGCAGAAGACACCCGGGAAATCATCAAATGTTGTGGATTATAGCAATCCATTTGCAGTTACTGA TTTCCTCAATTGTTTAGACAGTGGGAAATTTGGAAGTGTAACAAAGGACATAGAGTCCCTTTTTACTCGAAAAATGCAAATACTGGGGACTTACTTTGCC AAATATCCATCACTGCTTGATCACTTAGTGAATGAGGTAGTGAATCATGAAGAAACCCATACGCTGGAATGTCAAGAAGTTGCTGATTTGGAGGCTAAGC ATGTTGACAAGCATGTTCCACCAGCACCATCATCTGTTGTGATTATTGATTCAGATGATGACGAAGATAGAGATCAAAAATCATTTCTTCCATTTCATAA AGTTGTGTTGCCGAATCAACCATCTCCTGCAGTGAAAATGACTGAGTCTCATCCTCCCATTCGTTACAGTGAAGAAAATAAAGATCTAAAATTTGACACA AGTTTTTTTTATAACGGTAACAATGGGAAAGGAAAAGGCAAGCATCTTGATGATAAAGGTAATAGTAGTCAAGACAAAGGTGTTTATGTTGGTGTCGAGG ATGAAGAAGATGACCAGGTTGATACAAAGGATGAAGAACTAGATGATATTTGGCGGGAGATGTCAATGGCAATAGAATGCTCCAAAGATGTTTCTGTGAA CCCTCTGCCAGATGAAGAACCAAAAAAAGATGAGGATTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATT GACAGAGGAATTGAAACCATTTTTGAGTTCCAGTACAAGGTTAAAAGGAGTACTAGAACTTATGTGTCTGATTCATGGAATGCCAAAGAAAAAGATGCAT TTGGAATTAAGATTGCTGGGGATGATCTCTTGGTAACTGATATATCAGCGCACCCTAGGCACATGAAACAAATGAAGCCTCATCAAGTTGAAGGATTCAA TTTTCTTGTTAGAAACCTTGCAGGTGACCACCCTGGGGGCTGTATTTTGGCACATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAG AGTTTTCTAGGCAAGTATCCTAATGCTAGGCCTCTAGTGGTGCTTCCTAAGGGGATACTATCAACTTGGAAAAAGGAATTTCAAACATGGCAAGTGGAGG ACATACCACTATATGACTTTTACACTGTGAAGGCAGACAGTAGATCTCAGCAACTAGAAGTGTTGAAACAGTGGGTGGAGCGGAAGAGCATCCTTTTCTT AGGGTATAAACAGTTCTCTTCTATCATATGTGAGAATGGAACTAACAGCTCATCAACAGCTTGCCAAGAGATATTGCTAAAGGTTCCTTCCATTCTCATT TTAGATGAAGGACACAATCCAAGGAATGATAATACTGATATGGTACATTCCCTTGCCAAAGTACAAACCCCTAGAAAAGTTGTACTGTCAGGAACTTTAT ATCAGAATCATGTCAAGGAGGTCTTTAACATCTTAAATCTTGTGAGGCCTAAGTTTTTGAAGATGGAAACTTCTAGGCTTATTGTCAAGCGCATTTTCAG TAGAGTACACATACCTTCTGGTAAAAGGGGCTTCTTTGATTTGGTAGAAGACACTTTGCAAAAGGACCCAGATTTCAAAAGGAAAGTAGCTGTTATACAA GATTTGCGTGAGATGACTAGCCAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCCGGTCTTGTTGAATTTACTGTGGTCCTCAATCTTA CCCCGAGACAGAAGCATGAAGCTGACAAATTAAAGAAGTTATCCAGGAAGTTTAAGATTTGTTCTGTGGGTAGTGCTGTCTATCTTCATCCCAAATTGAA GCCTCTTGCTGAAAAATGTGGTGAAAATAGCATATCCTGTAACATAAAGGAATTGGATGATATCATAGAGAAACTAGATGTGAGAGATGGAGTGAAGTCA AAATTCTTTCGCAACATGTTAAACCTATGTGACTCAGCAGGGGAGAAGCTTCTGGTTTTTAGCCAATACCTCTTACCTCTGAAATACTTAGAGAAGCTAG CTATGAAATGGAAGGGTTGGAGTCTTGGGAAAGAAATCTTTGTCATCTCAGGAGAATCAAGCACTGAAGAAAGAGAATGCTCCATGGAGAAATTTAACAA TTCACCTGACGCCAAGGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGCATATCATTGGTTGGGGCATCCCGCATCATTATTTTGGATGTCCATCTC AATCCATCAGTTACTCGCCAAGCTATTGGCCGTGCTTTCCGGCCAGGACAGAAAAAGAAAGTCTTTGTATATCGGTTGATAGCTGCTGATTCTCCGGAAG AAGATGATCACAGTACTTGTTTCAAGAAGGAATTAATTTCGAAAATGTGGTTTGAATGGAATGAGTATTGTGGTGATCGAGCTTTTGATGTTGAGGCAGT TCCTGTGAAAGAATGTGGTGACCTTTTTCTTGAAAGTCCAATGTTAGGGGAAGATGTTAAAGCTTTGTATAAAAGGTAGACCGTGTCATTATGTTCATTG GACTTGGGAAGGCCAATGTCTTTTGCTGTTATATGAGTACTTATATTGCTGGATTTTTGATTCAGAACAAAGGAATTACTGAATTTGCTATCTCATTAGC TAGTTATATGTGACTCATCAGTGTGTTTAAAATTAAGCTGCAGTTGTTTAGTGTTAAATTGTCCTAACTTGTTAGTACTACAACAATCAGGTTAATCATG TGTCAAATATGGCCTCAGCTTATTATGTGTTGTTTGAAATTTTACAATTGCACTTTATTGAAAGAAATGAAGAGGTTCTTGTACATGCCTTTACTTAAAA AA
• Tissue: pods
• Gene name: LI_gene_168439;
• Additional information: details;

Expression of Ll_transcript_484767

FPKM

• PAB: 1.4
• PNAB: 12
• PS1: 19.4
• PS2: 10.1
• PS3: 15.1
• PW1: 10.1
• PW2: 8.6
• PW3: 6.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_484767

• Blastp: Protein CHROMATIN REMODELING 35 from Arabidopsis with 56.58% of identity
• Blastx: Protein CHROMATIN REMODELING 35 from Arabidopsis with 65.36% of identity
• Eggnog: helicase(COG0553)
• Kegg: Link to kegg annotations (AT2G16390)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019449406.1)
• Pfam: Type III restriction enzyme, res subunit (PF04851.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;