| Id Trinity | TRINITY_DN49406_c0_g2_i6 |
|---|---|
| Name Transcript | Ll_transcript_352828 |
| Sequence | CGACACAACGTCGTTGACATGAAAACAAACGACATCTCCCACCCGTCGTTTTGGCAGAAACTACATTCCTAAGTTTCATTCTTTATCTCAAGCCAAGCCT GCTACTACAAATGCAGAACATGAAGAGAAAGAGAGAAGGTGAAGCGGGAATGGATATAGTGTGGCAGACCCCAGCGAATCCCCCGCACCCTCAAGACTAC ATTTTTCGTAACGGGACACGATACGTTAAACCCTACTACTTCGAGTTTATAGCTCATGTTAAAAATCGATGGGCAGGGAAAACCATTGTTGATTTATTCG CCGATGAGTTTAAGGGTCGACCTTATGAATATTATGTTAGTGCAGTAAAATGTGGAAGGATTCAAGTTGACGGTGGGATGGTGCCAGTTTCATACATGGT TAAATCATCTCAAAAGATAAGCCATTTCGTACACAGGCATGAACCACCTGTGATGGCTTGCGTTGTTCCTATTCTTCAAAAAGAACCGGATGTGCTAACA GTTTGTAAGCCAGCATCCGTCCCTGTAAGTAAGCATTAACAAGTGGACTGATGAATTGACGATTTTATAAACCTGTCATGTTCAGTAAGATACATAGGGA ATGTACTTGCTCTCTTCCAGCTGTTTCCTAACTATTGTTTTTAGTCTTATGATGTTTTCTTCTGATTTTTACTGAAAAAAACATAAATTCTTGTATCGAT CTTCTATGAATATGCAATTTACTAATACATACGTTATATTTTGTAATTAGAATAGTTTTAGCAATAATACCCCTCTGTTAAGATGTCACTTTTTTTGCAT TACTATCAAAGATGCATAAGAATTTCTTCAAAACAAAGATACATAAGAATTGGCTACAAAGGACAAAATGCAATATCTTTTTAGTGGGAATGCCTCTGTG TATCTCTGTGCCAGATCCAGAATGTTTTTAGCTTTCTGCTTGTCTTATTTTACATGTCGTGGGTTTTCAATTGCTTAGTATCTCCAAAAGACTGAAATTA GCATCCTAATTATTCATTTATTCAGTAAGCTATTTTGAACTCTGCTAAAACGAATGTATTTTCGTATGCTTCTCTGATAAGCTTACTGACATAAGCTAAA CAAGCTTATAGGGAGGTCATAGGCTATTTTCGTAAGCTTAGGAAAATAAGCTGTTTTCACTTCTCAAAAGTCAACTAAGCTCTCTAGAATCACTTAACTC AATATGATTAACAAGATGTTGCTTTTATGGTATTGAAATTATTTCCTTAAGTTCTATGAAAAGAAAGTCTGAATTCTAAACTCATTTTTCAGTACTAAGA TACAAGATACATTTGTAAAATTCAGTTGCTTCTTAATCATAGACTGATCTGTATTTCATATTTCATATGTGCTAATGCTGTGTATTTTAGCGGTTACATA GGTTCATCCATGTGGTCAATATCGTAAGAACACTGTTGTTGGCATCCTTGAAGCAGAGCATGGGCTAGCACCTCTTTTTCGTATCCAAATTTATTTTTTT GAACTAGATTATGTAATCATTATCATTATAAAAGATAAATGTTTTATGCTAATAAGGTTTTTGATTTCCAATTACCACAGAAAACATGTATATTAGAGGG TGAGCCTCGGCACAACGGTAAAGTTGCTTGCCTTGTGACATTGAGGGCTTGAGTTCAAATCCTGGAGACAACCTCTTATAGCTTGACAGGGCAGGACTGT GTACATCTATCCTCCACATGCCCCACTAAGTGGGAGCCTCATGCATTGAGCCGCTCTTTTATAGATAACATATATATTCTCTCTCGTACATAGTTTCTTT GCATACCATATCTGTTGCAGTTTATACATTTGTATTTTGCCTTGACATGATCATCTCAGCGATTCATCGACTGGATCGCCTTGTCTCAGGACTTCTCATT TTGGCTAGAAATGCTTCTAAAGCTGATATGTTTCGGCAGCAGATTGAAGGTGGCTTAGTCAAGAAACAATATATAGCAAAAGTAGTTGGCGAGTTTCCTA AGGATGAGGTATTCTTTTATTTGAGCTTGATAAGTTATGTTACATATACCCATAAGTGATAGTGTACTGTAGAAATATACCCTGCAAGTATTTCATATAT GAAAGTTTTGTATAAATAAAAAATAATGAGTTTAAAATGTATACACTGACAGTGTAAAGATTTATACACATGCATTCCATCATCCACCAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_169072; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_352828
| Blastp | RNA pseudouridine synthase 7 from Oryza sativa with 76.92% of identity |
|---|---|
| Blastx | RNA pseudouridine synthase 7 from Oryza sativa with 76.92% of identity |
| Eggnog | pseudouridine synthase activity(COG0564) |
| Kegg | Link to kegg annotations (9269812) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019417834.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |