Id Trinity | TRINITY_DN49422_c1_g1_i12 |
---|---|
Name Transcript | Ll_transcript_354714 |
Sequence | ATTCTATCAATAAGGTCTTAGTGGTGTAAAATTACACTATCTCTAAAGTGGATGTTTTAATACTCTTGTTTAAGAGGAGTAATGACAACCCAAAAATGAT GAGTTAATTGAATAGGGGGCAAAGAAGGGTGTGCAGTCCATAGATATAGTAGTACAAGTTTATATCACAAAGCACTCCACAATTTCTCTCTTCTTCTTCT TCTTCTTCTATCTCCCCGGCTCCAAAAACAATGTCTCACTTCGGAAGGGCTGGTCCCCCAGACATCTCCGACACTTACTCTCTCCTCGTTCTCAACATCA CTTTCCGTACCACCGCTGATGACCTTTTCCCTCTATTTGATAAGTACGGCAAGGTTGTTGACATCTTTATACCCAGAGATCGACGGACCGGTGAATCGAG GGGTTTTGCATTTGTGCGGTACAAGTATGGTGATGAAGCTTCAAAAGCTGTGGATAGGCTCGATGGAAGAATGGTTGATGGTCGTGAAATAACTGTTCAG TTTGCGAAGTATGGTCCGAATGCTGAGAGGATGTAAGTTATATGTCTTTTGGTTCATTGCAGATATTGTAAATTGTTTGTTATGCCAAATTTAACTTGTA CTTTGTTTTTTGTATATATATACCCGTATTTACCATGGGCATGTTTCTGTAAGATTTTTCCCTAAAAATGATTATTTTGGTAGAAAAAACACTTTTTCAC TTGGAAATTTGTGTGGTTGGGCTTTTACATAAAACACTGAACTGCAAAAAAATGAAGCTGAATTTTGAGAAGCTATATTTCAAGCTTCTCAAAATATCCC CAAAATCAGTTTTGTTGTTGCTTGGAAATTTGTTTGGTTTGGTTTTTACTTTTTACATAAACGGCTGAAGCCAATAAAAACTGACTTTTGAGAAGCTATA TTTCTGGCTTCTAAAAAAATCCCTTCTGCCAAAATCAGTTTGTAGAGTTACCTTTGTTAAGCTTAAACTGACCCATTATTATGTGGACTCTAACGTTCTT CAGTTTTATACAGATAGTGATGGTTATTTATTTATTATGTTGCATGACTGACCTAGCTTTCTCATGGTGTAAGCTTTAGTTTATATGTATTAATCATTTG CTAAGTTTAGTTTATTCAATTTACAAGTCACAAAGGAAGGATTATCGAAACATCCCCAAAACCAAATTCAAGGCACAGGTCAAGGAGCCGCAGCCCCAGG AAAAGGCATCACGATGACTACCGAGACAGGGACTACAGGAGGAGAAGCCGCAGCAGAAGTTATGATAGATATGAACGTGACAGATACCGTGGGAGAGACA GAGTTTATCATCGCCGAAGCAAGAGCCACAGTCCCAGTCCGGATTACAAGAGTCGTAGAGGGGGACGCTATGATGATGAGCGTCATAGCAGGAGCCTGAG CTGGTCTGTGGATAGCCGTTCCCCTGCCCGACACCGTCCTAGTCCTCAAAGGAGTCTTTCCCCAAAGAAGAGTATTTCCCCTCCAAGGATTGCTTCCCCA AGGAAAAGTCCACGGGGTGAAAGTCCTGACAATCATAGCCGTGATGGACGACGGTCTGCTTCACCTCGCAGTGTCTCACCACATGGTCACCCTGATGCTT CGCGAAGCCCATCCTCTCGAAACTCCAATGGTGATGAATGAGCTCTGTTCTTAATGAAAAATTCTGGAGACTCGTTGAGTACTGCACTTGTAGCTGTTTT GGGAATATAGCATCTTTTGTCCATTGTCAATGGTACTTATCAGAGTCATTGAAGGATTTTATGATCTATGTGCTATTTGGTAGGGTCAGATTTCCTTGGT GTTTGAATGTTTCTACATTTGGACTTATTGTGTTTTCTACATTTGGTAACTATTGGACCTTGTGGTTGATTTGTTAATATTTCAGTATATGAAGGATTTT GCCATTTTATTTACAGTCAAGTGGTTGCATTTTTCTTTTATTTCTCCATTTTCTTATACCACTTTAAAAGGAAAGTTTGTAATCTAGCTCAGTTAATTTA TAAACAACTTATTGGGTTTTATAGTTATGATCGGGAAAAGTGATGAGGGCCTGATAGGCGCTTGTTGACATGGTTGCTGTTGATGCTGTTTTTATGTCAT TGATGATTGGTCGTGAATTTGATGCTGTTTGCAAGAGTATGCTGGTTTTAGAAGTATGATTGTTATACCAGTGTGCTGATTTGGCAGACAATTAGTTGAT TTGGTTTTTCCTGATCGATCTAATTGGTGGTAAGATTTTTGGTTTTCATTTTTCTTATGAAATCCCTCATGATGATTGATGATTCTGATCTTTGATCTGG TAACCATGTCTGGTCTGTATCAACGAATCCTGAAAGGGATTATTGGTGCTGTGATGGACACAAGTAGAGCATATTTTGACATGTAGCTGATGCCTGATAG GAGTTGCACCTGTCATGTGTTGATTCAGCTGCAGATAAACCTTAACTGTGGCACTAAATATGAACCGTAAATAGCTATTGTTATTTCAAATAATGAAAGG GACAACGGTAACATATTCATGGTTACATTTTTGTGCATTTTAGTCCATATTATTTAACATTGACCTTGGAAGATTATAACATCTGCTACTTAATGTAGTG AGATATGTATCGCGCAGCAGCATGACAGTAGGTCTGTAGCTGTGAAGTGATAGCCAATGCATCTTTTATTTGAAATACGTTGTTCGTGAATAGTTTGAAG AATTGACCAGTTACTGTAGCTGAGTGTTGCTGCCCTTTTTGCTGGGGTCGGGTTGTCAATGTTATTAGTGGTTATTGGTGATGGCTGTCTAGCTGCGCTG CTGGTTTCTGTTGATTCCGAAGTCACCGGAAAATCATTTTTCCAATTAAGTGGTGATTGGTTTTATAGTTTCTATTTCAGTTCATTCATTCCTCTTGCAG CATTATAAGATTCTTGGTTTCTTGTTATTTGTTGCTATAACATTGTGATTACTATCTCGACATTGTTGTGGGATTCGGCTACAGAAATAGTGACTACCAT GTCTTTTGTAGATGTGGTTTCTCCAAATTGTGTCCCTGTGTAATTGATGAACTAATTATGATTTATATCCATTTTTGG BLAST |
Tissue | pods |
Gene name | LI_gene_169229; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_354714
Blastp | Serine/arginine-rich splicing factor SC35 from Arabidopsis with 89.11% of identity |
---|---|
Blastx | Serine/arginine-rich splicing factor SC35 from Arabidopsis with 89.11% of identity |
Eggnog | serine arginine-rich splicing factor(ENOG4111NJ8) |
Kegg | Link to kegg annotations (AT5G64200) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019426369.1) |
Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |