Ll_transcript_353316

Id TrinityTRINITY_DN49451_c5_g2_i2
Name TranscriptLl_transcript_353316
SequenceAAGTATTTTTCTCTCAGTAGCCCAAATCATTATCAAAGCAGTGTAAGAAGGAAGAGAACAAATACTCCTTCTTACTCCTCCAAACATGGCGAAGAACAAG TCTCTATCCTCTTCTACTTCTTCTTCTTCTTCTTGTTACAGTACAAAAATGGTGTTTCAATGAATTGAAGAAAATGAAGTTGTTATTCTAAGAAACAATG ATTAAACTACAAAGAAGCTTCACCACTTGTTCCACTTCTACTTTCTCAACTTCTTCTTCTCTCTCTCTTCGCCACTTCTTCATGTTGCAATTTAGAATGC TTCAGAGTTCTCCAAACTCTTGCTTACAATACACGGCATTAGGCGTTGGGATTGGAAATAGTATCCAATGTCAAAGGTGTTTCCCCAACGTTAAGATTGG AGTGAAACCAAAAAACTATTCTAGCATTCAGCCGAGTTTTCGTTCCTTCAGCGGAACACGTGTTAGTGGTCGTGGTTCTAGGTGTATAGCAGCATCTCTT GGTGATTTTGGTTTTAGGTATCTGGGGAATGGTGTTGGAAGGAGTTTGATCAGTGATGGAGGTTTTCCGAAGAGATTTTCGTCTATTGTCAAGAAAGGAA CGGATAATAAAAAGAAGGGGGTCAAAGCTCTTGCCGTTCATGGCAAAGATAAAGATGCAAGTGATGGTGCCTCTGACTCTAAAGATGTTGTTGTTAATGG GGTGACTTCGAGGAAAAGTTCGGATGAAAACAAGAAAAAACCGAAGAAGGTGTCACCGGTATCAACTGCTCCTTCGGATGCTGCAAGTGATAAGAAGGAC ACTAAAGTTGCTGCCAAAAAGAAGAAGCCATCAAAAAGCAAGAAAAACAGCACGGTTGCTGGAGCGGAAGTTTCTACGAAATCTTCCAAAGGGAAGAAGA CATCTAATTCTAGTGAACCTAAAGCTGATAGTGCAGTTGAAGAAGTTCCAGATAATAATGCTCCTACTAAGAATCAGACAAAGAAAAAAAGTGGGAACAC TGCTCAGGCAGAACAGGTGAAATCATCCCTTGGGAAATTTACCGACAAGCCACTATATCCTCCTACTGGAAAGTCTGTGCTGGTCGTGGAGTCTGTTACA AAGGCGAAGGTCATTCAGGGATACCTTGGCGATATGTATGAAGTCTTGCCGAGCTATGGTCATGTTAGAGATTTGGCTGCAAGGTCTGGATCTGTGCGAC CTGATGATGATTTTAGTATGGTGTGGGAGGTTCCGTCGCCTGCCTGGACTCATCTGAAGAGCATCAAGGTTGCACTCAGCGGAGCAGAAAACCTTATTCT TGCGTCAGATCCCGATCGTGAGGGAGAGGCTATTGCCTGGCACATTGTCGAGATGTTACAACAACAAGGTGCTCTGCATGATAATATTTCTGTAGCAAGG GTTGTCTTTCATGAAATAACGGAAAAGGCGATAAAAGGTGCTCTGCAAGCACCACGAGAGATTGATGTCAGTTTGGTCCATGCTTACCTTGCACGGCGTG CTCTTGATTATCTGATTGGGTTTAATATTTCACCATTACTATGGAGGAAATTACCAGGTTGCCAATCAGCTGGAAGAGTTCAATCCGCTGCACTTTCACT TATATGTGATAGAGAAATGGAAATTGACGAGTTCAAACCAAAGGAGTATTGGACTGCGGAGGCCCATTTGAAAAGAAAAGAGCCGGGGTCAAATGAGGAC CTTAATTTTCCTGCTCACTTGACCCATTTGGATTCAAAAACGTTGAATCAATTTTCAATTACTTCTAATACAGAGGCAACAGATGTCGAAAACAAAATAA ACTCAGCAGAACTTCAGGTTATTAGGTTGAAAAGAAACAAAATTCGAAGAAATCCTCCTACACCTTATATAACATCAACACTTCAACAAGATGCTGCAAA CAAATTACATTTCGCAGCAAGTCACACAATGAAGCTGGCTCAGAAACTATATGAGGGAGTCGAACTTTCTGATGGTAAAGCAGTGGGTCTGATAACATAC ACCAGAACAGATGGATTACATATTTCTGATGAAGCTGTTACTAATATACGCTCCTTGATCACTGAAAGGTATGGACAAGAGTTTGCCGCACAAAGTGCAC CAAAATATATTAAAAAGGTGAAAAATGCACAAGAGGCCCATGAAGCCATTAGACCGACCGACATACAGAAGTTACCATCAATGCTTGTTGGGGTACTAGA TGAAGAATCCTTGAAGCTGTACACGCTTATTTGGTCACGAACAGTTTCATGTCAGATGGAACCAGCTATCTTTGAGCAGATACAAGTTGATATTGGAAAT GCTGGTGAGTCTATTATTTTACGATCTACAAGCTCAAGGGTTGATTTTGCTGGATACCGGGCAGTTTTTACGGACACTGAAACCGAAGCCGTTCAAGATA AAGGAAATGATGGATCTAATCGTGATCAATATTTTGGAGTTCTAAGTTCCTTGAAGCAAGGGGATCCATTACTACTTGTTCGAGCAGAGCTTAATCAGCA CCATACGCAACCACCGCCACGTTACAGTGAAGCATCATTGGTTAAGAAGCTTGAGGAGCTTGGGATTGGAAGACCTTCGACATATGCATCCACATTGAAA GTTTTGAAGGATAGAAATTATGTGATAGTAAAAAGTCGTGTTCTGACTCCAGAATTTCGTGGTCGCATGGTGTCGGCTTTTCTTTCTCATCATTTTTCAG AGGTCACAGACTACAGTTTCACTGCTGATATGGAAACCGAGCTTGATAATGTTTCTGCCGGATTAACCGAATGGAAAGGCCTCCTTAGAGATTATTGGAC ACGGTTTAAATCATATTGTGACCGTACTTCTAATGTTCATATTCACCAGGTTGAGAAGATGTTGGAAAAAAAATTCGGGGATTATTTATTTGCTTCTCTC CCAGATCAGAGCCGGGTGTGTCCAAGTTGTATGGAAGGCACCCTGATTTTCAAAGTGAGTAGATTTGGTTCTGGATACTTTATAGGCTGTGATCAACATC CGAGATGCAAGTATATTGCTAAAACGTTATATGGTGTAGACGAGGATGAAGATACACCTCAGCCAAACACTACAATAGAGGAACCGAAAATCTTAGGTGT TAGCAGTGGTTCAAATGAAAAGGTTCTTTTGAAAAAGGGTCCTTACGGATTTTATATTCAACTCGGAGAAGACAGGAAAGGATACATACCTAAAAGATCC TCTGTCTCTCATATCAAGGATGTGGACTCTATCACCCTTGAAGATGCACTTGATTTGCTAAAATACCCATTGACATTGGGTAACCATCCCGATGATGGAC AACCTGTCATATTAAAGCTTGCGAGAGTTGGATTTTCTGTTCGATATCGCCGCACAATTGCTTCGGTTCCTAAGGTATGATTACAGTTTCGGGCATTTTT TTGTCGATATTATTTCCTTCCATAATTTGGTAGTTGTGTGTGTTCAAGTCACACACACTAACATTTATAATACTAGAAAGGCTTTCATGAATGTTATGTA ATAATTACAACTATTGTAAATCAAATCCTAACAATTTGCCATGTGCTAAATGTGGTATTATTAACACTCCCCTCAGGCTAATGCTTATTAAGCTTGTTAC ATGAAAATATACAAACTTCTCTCGACACCGGAATCTTTGAAATTGAGATTAAGGCTAGCATCTGCTTCTAGGACAAAGATGAGGCTGATATAATTCATAA CCAATATAAATCACCATCGTCGATGGGAAATGAGTCACTACTAAATATGATTGATCAGTGGGAGAGGAGGCATCATCGAAATGATTTTGGTATACGATTC GTCAGTGGGGTAAAGAGGCACCACCGAAATGGCATCGGTGGGAATAGCCACTGGTATGATCCAGTAGTGGGATAGGAGGCACCGCCGGAGTGGTCGTCAG TGGAAAAAGAAGCCACTGTTATGATAAATTAGTCGGAGTAGAATGATCTGACAAACACCGAAGAAGCATGAAGTAGAGCAGAGCCAAACAACATTTCATT TTTGCCGAGACATTCGCATGGGTTTGGAAGGGTGGCTTGAGCGACTGAAGCGTTGAGATCAGATGAGCTCGTGCTGGCATGTGATTCACCGGAACATGGT GAGTCTTGCCCCTTTGGACTGATTGGTGGAAGATGAGCAAATTGGTGCAGTCGTTGGCCAGAAAGAATGTCAGACGGATGTGGATAGCAGTGCTGGACAA GGCTGTTAGAGTGATAACAAAATGAAAAAATAAAGGTTCAGCAACCGGAGAGGTGGCTGGTGCTGGCAATGAGAAGTGACAAATCGGAGTTCGGGAGACA GATTTCGGAACTCGAGCAATGGAAAGCGATGAAACATGTCACTGAGGATGATGGTACCATATTGTAATTGGTAATTGTGTGTGTTCATGGCACACACCCA TCATCTATAATACCATGATTTACAAGATTAGTATTGTAATAATTACAACAGTTTCAAATCAAGTCCTAACATTAATGCATATCAATTTCTGATTTGCATA TATGCTAAATATGCTATTTCTGCAGCTAAATTAGTTAGTACCTGTTGAATTCTAGAGTTTTAGTGTTAATATGATTATAACCTAGACTTAAAATAGTGTG ACTGATATTAATATGATTATATAAGTACAAAATAAAAATCTAATAGTCCTATATTAGTAGTACAATTTTAGTCCTAATTAAATAAATAAAAATAAATCTT AGAATTGTTTTTTTTGTTGTCGGCCTAAAGTTTTTTACGCGATCATTAACATATGAATATGAATGATGGATGGTACAGTATAAACGATTTTGTTTTATTG TTGTATTTCAGGACATGAAGCCAAGTGAAGTG BLAST
Tissuepods
Gene nameLI_gene_169478; 
Additional informationdetails; 

Expression of Ll_transcript_353316

Labels

PAB abscising pods
PNAB non-abscising pods
PS1 seeds stages 1-3
PS2 seeds stages 4-6
PS3 seeds stages 7-8
PW1 pods wall stages 1-3
PW2 pods wall stages 4-6
PW3 pods wall stages 7-8

Annotations of Ll_transcript_353316

BlastpDNA topoisomerase 1 from spotted fever group with 43.21% of identity
BlastxDNA topoisomerase 1 from spotted fever group with 43.21% of identity
EggnogReleases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity)(COG0550)
KeggLink to kegg annotations (RF_0530)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019438806.1)
PfamToprim domain (PF01751.21)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;
Links to GO: General; Genes and gene products; Annotations; Ontology;