Ll_transcript_405080

• Id Trinity: TRINITY_DN49500_c4_g1_i3
• Name Transcript: Ll_transcript_405080
• Sequence: TGGGGATAAATTTACAAACTTGCACTGTATGTTAGTTACGTACCTATAGGTACCGGAGTGGATTAGGGTTTTTTCCAATCCAAATTCCACTCTTCTATTG ACATGGCGAATCGTACTGATCCAGCAGCGAAGAGCATAAGAGGTACGAACCCTCAAAACCTGGTCGAGAAGATTCTCCGATCCAAAATCTATCAGAATAC CTATTGGAAGGAACAATGTTTCGGCTTAACGGCGGAGACCTTAGTCGACAAGGCCATGGAACTCGACCACCTCGGCGGAACCTACGGCGGCAACCGTAAA CCCACTCCGTTCATGTGCCTTGTCATGAAGATGCTCCAGATTCAGCCCGAGAAGGAAATCGTCATCGAGTTCATCAAAAATGAAGATTACAAATATGTGA GGATACTTGGTGCTTTTTATCTGCGTTTGACTGGTTCTGATATTGATGTTTACCGCTACCTTGAGCCCTTATACAATGATTATCGGAAACTGCGGCAGAA GTTAGCTGATGGACAGTTTTCATTGACACATGTTGATGAGGTTATTGATGAACTTCTCACTAAAGATTATTCTTGTGATATTGCTATGCCCAGAATCAAG AAAAGGTGGACTATTGAATCTCTTGGTGCACTAGAACCTAGACGAAGTGCACTTGAAGAAGATTTTGAAGAGGAAGAAGAAAAAGAAGATAGTGACCAGC CTGCCGATGAGCATGAAGATAGGACCCATGAGAAGGATTACTATCGTGGGCGAAGCCCTACAAGGGAAAGGGATAGGGATAGAAGACGTGATACTCATAG ACACAGGGATCGTGACTACGACAGAGACTATGACAGAGATTACGAAAGAGAGCGTGGACGTGGCCGAGATAGATACAGGGACAGGGAAAAGGAGAGGGAC AGGGACCGATATTATCTCAGGGATGACAAAGAATATGGTCGTGACAGAGAGGGTAGGGAGCGGGAGAGGAGAGATAGAGATCGTGGTCGTGGGAGGCGAA GGAGCTACTCAAGGAGTCGAAGTAGGAGCAGGGATCGCAAGGAACATGACGGAGACAACAGAAAGAGGCGTGCTCGGGGCAGCCTAAGTCCTAGGAGGCA TGGAGATGGAGTTGATGATGGCGAGCCAAAGAAGAAGAAGGAGAAGAAAGAAAAGGAAAAGAAGGATGATGGGACTGACCACCCAGATCCAGAGATTGCA GAAGCAAACAAACTACGAGCATCCCTTGGTTTGAAACCACTGAAGGTCTAATAGTTGTTGTTTCACATGTTTTGACCTCTATGGATTATAGTTGTTGCTT TTTCTTTATTTACCGAGAGCCTGTGCTGTCAAATTTTTGTAGGTTTGATTGCCTTTATCTTAGAGCTTTTACCATATCCAGAGTGTCTGAAATTTGAAGT ACATAAACTTGTAATCTTTGGAGTTAATATGACTAACTCTTATCAAAATTTATTGGTTCAATGCTGTGGTTTGGTTACTGTGAATTCAAAAAATACAGCT ACAGTTGAGATCTTATCCAGTAATAGAGGATCCTGTACTTAGCGGATCTGTTGACATTTGGCACAAAACAAAAATCAAG
• Tissue: pods
• Gene name: LI_gene_169871;
• Additional information: details;

Expression of Ll_transcript_405080

FPKM

• PAB: 7
• PNAB: 11.8
• PS1: 15.6
• PS2: 13.5
• PS3: 17.8
• PW1: 13.9
• PW2: 15.7
• PW3: 22.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_405080

• Blastp: Pre-mRNA-splicing factor 38 from Arabidopsis with 83.5% of identity
• Blastx: Pre-mRNA-splicing factor 38 from Arabidopsis with 85.87% of identity
• Eggnog: RNA splicing(ENOG410XQ3F)
• Kegg: Link to kegg annotations (AT2G40650)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019452266.1)
• Pfam: PRP38 family (PF03371.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;