| Id Trinity | TRINITY_DN49508_c0_g2_i2 |
|---|---|
| Name Transcript | Ll_transcript_406302 |
| Sequence | CCGCGGTGTTATTAACCCGTAACACCCTTTTACACAAACGCCTCCTCCTATACACTATTCAAAAAACCCTACATAAACAATATTTCAATTATCATAAATA AAAAAAGAGCCACATTTCCTATTCCTACTCCAGCTTAGTCTATTGTTGTAATTCACCCGAACAATTGTTGGGTCTTCTTATTCTTCTTATCTGTTTCTGT ATTTCAATTTTCAGCGACCACATCAAACTTCATTTAGTTGCCATCTTCCTTCATTTCTCTATGGGTCTTCCACTACTTTCTTCTTCGTTTTTGGATCCCT CCTATAATAACGGTGTTTTCTGCAGCATGGAGTTTATGAGGCCTCCACTATCAGCTTCTAAGTCATATTCTCCTGCTTTGAAGGTTTTATTTATTTGGTT TTCGCTTTATATGTATCTACTTTTTAATTTCATAGTTATTTGTAGCATTTTCAAGGTTCATTGCATTTCCTCTAATTAAAAATTTGTATAGAAACTAGGG GAATGATCTCAGTCTATTCTGACCAATTATTTTGATGCTGGCTTGCTTTCTTTGTTCGTCTAAGGAGATATATAACCCATTCAAATCAAATGTTACTACA CCATTCCAATACATAAGTCTTGGTTGTTATTCTTATTAGGATATCCTATAAGTTTGTCAAGTTACTAACCACTATTTGTTGTGTTTTTTAATTAGCTCTG CATCCAAAATATCTAATATTAGTGAACGTCAGATGCTAGCACTAATTTCAAGGCTTACTTGGGTAGTAATACCCTGTTACTTATTTGCAAACAGTATTCA TCTTCATAAAAAGTTGAATTTTATACGAGGAGCAAAAAGTCGATCTCTCTTGTGGTGCACTGCAATTATACTTTCACCTCCTTTCATGTTTAGAATTGAA ATTTTATTAGTTCCAAATTCTACATCAACAACAACCAAGCCTTTATCCCACAAGTTCCAAGTTCTAGCTTTAAAGAAATCCTCCCAGATAAACCTTTGTG AACCTATGATTTATTTCTAATTTACTGATTCTAGCGACTGGTTTTCTCCCATGGTTGATTGAGTTATGTATTGCCATGTTGATATATATCATAGCCAAAG GTTTGTGGATTTTTTGTTGACAAGATTGCACCAGGCTACATTGATGGTGCATGAATTGAATAGATTTGGTGACACCTGGTACAAAGATTGAGATGTTTAA CTAAATGTGTCATATAAAGAAAGATGGAATCAGAAAATAGCAGAATAATTTCAAATTTTATGAAATGTTATTTTCTTTAAGTGCTGTTTACAATTATAGA TAGTTTATTATGTCTTACTCCTACAAATTAACCATAGAAGTTGCTGAGGGAGTTCGTTATTTGAAGAAAGTAATTTAATTCTTTTCAATATAATATGATC TTTAGTTTATCTTTCAGAACAAACTTGTTGTGACTTAAACTTAAGCTTCGTCTATGTTGCAGTTCAAGTGTCAACAATTTCACAAGGGTGGGCTAACATC ACCAGGGGTTATACTCTGTGCCAGTCAAAGGCCCAGAGGTCATAAAAGTGTGTGGAGACGAGAACCATTACCCCAAAATGTGGATTTTCCAACACCTTTC CCAAAGAAAAAGAAAAAACCATACCCTATTCCCTTTAAAGAGATTAAAAAGGCTGGAAGGGAGGATAAAAAACTTGCAAATATGGGAATAGAGAAGCCTC TTGAGCCTCCAAAGAATGGATTGCTTGTTCCTGACCTTGTTCCTGTTGCTTATGAAGTATTTGATGCTTGGAAGCTTTTGATCAAAGTCAATGCTCAGAA GTTCATGTTGGTCGAAATGCTCACCGCATTCTGGATTGTGATGGTTCTACCAGTTCTCAGCGTCATAGTTCCCATTTATGGGTCAAGGGTTCCATCAATG ATATACTTGTCCCAATTGAGTCCTATCATCTCTTTGACCCCTTCGGTAGGCGCATCAAGCATGATACACGGTTTGAGTATGACCGGATTCCAGCTGTTGT TGAGCTATGCATTCAAGCTGGTGTGGATATCCCAGAGTATCCTTCACGCCGAAGGACCAACCCTGTAAGAATGTTAGGGAAGAAAGTACTTGACAGAGGC GGAAATGTAGAGGAACCTAAACCATGGCGCTTTGCAGAGTCTTCTTCACTTATTGAGTTTGATACTTACAGAGCTTCCGAGCGATTTCCATGTCCACCTT TGTCAAATATACCTGAAATTGCCCAAGAAACAATTGGCGCATATGAAATCGTAAGAAAGGGTGTCACGAGGTTGATGAAGAAATACACTGTGAAAGCATG TGGTTATTGCTCAGAAGTCCATGTGGGACCATGGGGCCACAATGTTAAGCTTTGTGGGTCATTTAAGCACCAATGGAGGGATGGGAAGCATGGTTGGCAA GATGCTACTGTTCGTGAAGTTTTTCCTCCAAATCATGTGTGGCATGTTAGAGACCCTAGTGGACCTCCGTTGAGGAATAAACTGAAGACATTTTACGGAA AGGCTCCAGCTGTGATTGAAGTGTGCATGCAAGCTGGTGCACAGATCATCCCAGACGTGTACAAGCCCATGATGAGGCTTGACATTGTAATCCCGGACAG CGAAGAGGCAAGAATGATTGCATGATGATCAAGTGCAGTTTATACAATGATATGTTCCATCAGAAGTGGAGGTATTCTACAGCACATGTCTGATTCATAG ACTAGAGGAATTTTAGTGTACATGTATACAAGCCAATAGAAGATGTAGCAGTAGGTTAAATTACTAAATTTTGGTTCATCAATTTCTGTATAATGTCTTA AACTAGTGAAAAATTATGTAGGAAGAGGCATATGTTAATTTATTGTATGTTACAAATACAACACAATCAAGTGGAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_169921; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_406302
| Blastp | APO protein 1, chloroplastic from Arabidopsis with 66.13% of identity |
|---|---|
| Blastx | APO protein 1, chloroplastic from Arabidopsis with 67.02% of identity |
| Eggnog | APO protein(ENOG410XP6U) |
| Kegg | Link to kegg annotations (AT1G64810) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019414110.1) |
| Pfam | APO RNA-binding (PF05634.10) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |