Ll_transcript_415502

• Id Trinity: TRINITY_DN49675_c0_g1_i7
• Name Transcript: Ll_transcript_415502
• Sequence: CAAACTCTTAACCACACGATCAAAATCTAGTTTTTAATCTTGACCGTGCATAACTCAGAAGAGTGTTAGATTCAACGGTCAAGATCAGATCTTCCATTCA ATCATCAAAAAGTGACACCTAATTATCTTTCTCTCTCTTCTCTGAGTCCTTGTTTCTGTGAATGAAACCCAACCCAAATTCAATTCACGAAAATTGAGTC CAAAGTTTGCATCTTTCACCAACTGGGTTGGTTCCAACACCTTCAATTTTTGGGTACAACGAGGTTTGGGTTGGCTTTGCATAATTTGTGGAGATACTGA AGCTATGGAAGCTTATAAGAGATGGGTGAGGCAGAAAAAAAAGACTATGTACACTCTTTGGAGTCTTTGGCTAATGGGTTGACATGGCTTTTTCCAGAGC GGTTTTTGGAATCAGATATTGGACCAGAAGCAGGTTTTGTGAAATTTTGATAACCTTCGGCTACTTCTTTTCAGTTTTAATTATGTTAGACTTTCTCTCA CTTCAAGAATAAAATGGTAAGCACAATAATGTGACTGTACTAGCAAAAATTAGGACCTTCTGGTTCTATTCCAATGATTTCTTTTGGTACATTCGAAAGA AAAAAACAAACTAAGCTAACAACGAAATATCTAACTGCAACAACGGTTGGCAATCTGTTGGGATTGAGCCCCAAATCTTCATCACATCTAGTGAGTGAGA ACCTAATTTTGCCACGAAATCTGCTGCCATATTAGCCTCTCTATTGACAAAGCAAACCTTGACGACCCAAGAAAGAGCCAACCAAGATCTGATCTTGTTG ATCAAAGATAGAATGCTAGCAATTCGAATAGGAATCTCCTCAGAAATAATATGCACAGCTTCCAAGCAGTCGCTTTCCAAGACCACATTCCTGAAACCTA GACGCCAAGCCAGCGACAACCCATTTTCGATAGCCAAAAGTTCTGCTAGAATAGAGGTCCCCTCACCATAGTTAGCAAAGAAACCCGATATCCATTGACC TTTAGAATCCCAAAGAACGCCGCCCCCTCCCATTATGCAAGAGCTTCTGATGCAACTACCATCTACACTCAATTTGACCTGGCCCAACTCCGGGTAGCTC CAATGAGTCATGGGGTACCTTTCCTCTAAAGACCGAGAACCGCCATAGTTGTGCCACTCCCAAAAATCCTGGTGAGTAAAGCGAACCACCAAATTGATAT CCCACTGAGTATCCCCCATAATAGTGTTATTCCTCCATCTCCAAGTCCACCAAATACCTGTCAAGAAGAGAAGACCATTTTTGCCATTATAATTCCCCCA CAACCAGCCCTTAAAAGACTGGGGTATCCAGAATCTAGGCGACGTGAAACCCAAGCGAACCCACAAAGATGATGAATCCTGACAATCCTTAAAGATGTGC AAGAGATCCTCGACACCCACCTGACACCTAACACAATTTGGGCTTGTAGCCAAGTGCCTTCTAAAGCGAAGAGCATTTGACGGAAGAGTGTCATGAAGAC CAAGCCAACACATAAGTTTAACCTTCTCAAGAATCCTCAGCCTCCAAACCATTTTCCAGATGTCATCCATAGATGCCACATTTCCTTCCACATCCATAAG CCAGTCATAGGCCGACCTAGCAGTGTAAGAACCTGTAACATGCCCATCCCAAATCCACCCATTAGATTCAGTAAGAGAACCAGGCGAGTAATTTCCACAA ATAAACTCCTTCACTTGCAACGGAAACATAGTATACAGTCTAGAAAAGTCCCAATTATCTGCTACCCATAGGTCCTTCACCTGAAGGTGAGTATCAGATA TATGGACAAAATCCACATAAGAACAAAGCATCCCCAAACCTGACCAATTTTCATACCATAAGGATTGATCCTCACTTCCCAAATGCAAGTTATAACCCAG TTTGAGCTTATCAAATGCTCTCACAATGCTTCTCCAGATATAAGACGTTGAAGCTTTTGGGGAGCAACAAATAAAGGATTGTACACCAGAGCTTATTGTT GCTACTGATCAAACTCCAACATAATTTTCCAAGAAGGGAAATGTTCGAAATTCTGGCATCCCTTATGCCCAATCCATTATCACGTCTACGCCTTGTGAGA ACCTCCCAACTGACAAGATGGAGGCCCCGACTATTAACATCACCACTCCAAATAAAATTTCTCGTCATCCTATTTATGTTATTGCATACAGTGTTAGGAA ACCACAAGACCTGCATATAATAAACCGGAATAGAGGAGATGACAGACTTCGCAAGGCATAAACGACTCGCTCTATTCAAGAGATTTGCTTTCCAAGAAGC CAAACGACACTGAATCTTCTCCAGAATAGGGTTAAAAATTGCCCTACCAACTCTTCCCTGAAGTAATGGTCCCCAAATAATTTCCAAGATTACCAACCAC CCTCATGGAACAAAGCCTCATAAACCGGTTCTTCCCCCTGTTGGTCACAGATCTGGAGCAGATAAATTTTGATTTGTCTACACTCACTTTCAAACCCGAT GCTTTACAGAAATCATTAAGAGTAGAGGAAACAACCCTAACCTGGGAGTTAGTTGCCTTGCAAAACAGTAAGACATCATCAGCAAAAAGGAGGTGAGAGA TACTAGGGCCACCCCGAGAGAGTTTAATAGGATGCCATATGCCACTATCCACCTTCTGAGAGATAAGAAGAGTGAGCTTCTCCATGCACAAGACAAATAG ATAAGGTGACATAGGATCCCCTTGGTGAAGATCCCTACTAGGAGTAAATGCCTCCAGCCTAGAACCATTCCAAAGAAGAGACACCTTTCCAATGGTTTGT TCATGTTGATCTTGAAAATGTTAGCTAGAAAATAGAAATAAGTTTACTTGGCAGAGCCTTGTGCCTTCTTAGATTCAATATGTTGCAAATTTCTAAAGTC ACACACATTACATTCTTCTATTTACCTACATCTCCTATAAAGTATTGCAAATTCTTATTGTCTTTTCTTTTTATCAACTTTCCTCCTATCATGCCTATGA TATTGAAATTTCTAGCTTACTTGTCAGATCAACAACTTTGTGCAGTGACTACAATTTTGGGAATTATCATAGCTGTCAATGAACATATAATTGATACAGC TCCTACCCAAAATAATACAGGCTCTACTGAGAAATATTTGTTTCCTTATCCATTATGCTTATCTGCATTGAAGGATTTGGAAATGTTAGTTGAAGTTGTG TCACAACATTACTATGGCGATGATAAGAAATGGAATTTCCTTGCTATTACTGAAGGAACCAAGGTTCTGGTTCGACTATCATTGTTTTGGAAGAGTGGAT ATAAGATGCTGCTTCATGGAGGGGAGACATATAATGATGAGACACATTCAGATAGTTTCGCTTCACAACACCAAACAATCTTAAAGCCTGATGGACACCG TGGTTCTGATTATATGAGAAACAATCATGGTCCAAACCCATGGAATCTGGAAGGAAGAGCACTATCTGCTTTAAGTAGTTTCGGAGAAAAAGCCAGAACG GGGTCAGATCCAATGTGGTTACGTAGGGTTCATCATCAACAAGCAACTCTGGAGCATACTGGTAATCGGTTTTGAAGATTTTTTAGCTGTAGACAGTAAA CTAATTGATTATAATGCTTGTGGAAGTCAACTAGTTCTTGTTGCCCGCTGCATTTTTGCAGTCTCAAGGGTAGAGAGACCAACACTTTCTAGCATATTGT CCAAAAGAGGTCTTCACGGGGTTCTGTTTCTGATTGGCGAAGTTCTATTTATTAGTAGACCACTTATTAATGTTCTATTTATTCGAAAATATGGTGTCCG GACATGGACCCCTTGGTCCCTTTCACTGGCTATTGACTGCATATCAAACAGTATTCTTTCACTTGTTATGACATCTGTAGATGGTGGGGATGAGCAGAAG TTTCATCTTTCTGCTCCAGAAAAGGATGAGGTTTGAGTTTCTTTAGACTTAGAGCCATACCATATGAACATAAATGGACCCTTCTACACTGAACTTTTGC TATTAAAACTGCATTTTGTGCTATCTTATTTGCTAGTAACATTCAACCCATTAAAGAGCAGCTTCTGAAATAGTTTTGCTTCAGGTTAAACGATGGAAGC TGTTATTTTTGTACTTTACCTAATGAGAGATCCATTTCTCAGCAAGTATACTAGGCAAAGACTCGAAAGCACGGAGACAATTTTGGAACCTTTACCTATC ATAGGATTTCTTGCAGCAAAAATCGTTGAGCTTATAATTGGAGCGCAAACTCGATACACTTACATGTCGGGATCATGATATAAAATCTAGAAGAAACACT TCACTGCCTTCCCAGATTGTGGGAAAGCATCTTACTGTGCTCTCACATTATCTCCTGTTCCAAAATTTTCAAATGATGAGGGGATATGAAGTATGCTACT ACTTTGATTGAAAAGTAAGAAAAATGGCAAGCTTGAACATTTGTTTTGCACAATGATGGAAGGTTATGGCTGTCTGCGAATTCAACACCGAACGTGAAAC TTTTATTTCATTCGGTTCCTTTACGGACTTAATTCAGAGATGTTGGACAAGTTGATTGCAAGGATGGCTCTACTATCAACATTTGTTTTGAAATTTTTTG CTTTAATTTTAATAATAAAAAAGAGAAATAACAAAAGATACTGATTTGTCAAAAATATTATTAGATGCCAGTGCAAAGATATTATCACACTTGCATACCA ATTAAACATTTCATTGTTTTATTCTACTCCCAAACAAAGAGGGTTGGTGAGTCTACCTCAAACACTTGTAGTTATGAGCGTCAGTCAATTGGAAAGTTTA TCATGTGATTCTTCAGCTCAGCAAGCTGTATTCTGATCGGAGTTTCAAGACAAACCGGTTTTTGCCTTGGCCGGCTGGTTATCCGGTGTGGCATGCCTTT TAATAGTCTAATCCGGTTCAACCTTGAATTGGACAAAGACACCTGGTTAGGACAGGCACAATTTTCACTTCAAGGTTGGACCGGACGAGTCGGACTGCTG GTACGGTTGTACAACAAAGCAAACCATTATTCTACACCTTTGTAGGTATTACAGTTGTTCTGTAGTGATGTAGCCATTTATTATTTTCGCGTGTCATTGT CCTTTTGATGGTTGAACTAAATGTCTCTGTTTGTTAAGGTACTATGAAATTATT
• Tissue: pods
• Gene name: LI_gene_171264;
• Additional information: details;

Expression of Ll_transcript_415502

FPKM

• PAB: 0.3
• PNAB: 0.5
• PS1: 0.3
• PS2: 0.3
• PS3: 0.5
• PW1: 0.7
• PW2: 0.4
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_415502

• Blastp: Putative ribonuclease H protein At1g65750 from Arabidopsis with 28.81% of identity
• Blastx: Peroxisome biogenesis protein 16 from Arabidopsis with 50.28% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019431061.1)
• Pfam: zinc-binding in reverse transcriptase (PF13966.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;