Ll_transcript_455615

• Id Trinity: TRINITY_DN49713_c0_g3_i2
• Name Transcript: Ll_transcript_455615
• Sequence: TGGAAGTGTTGCCTATTGCAGAATCATTGGTTTGATCATCTTCTTCAAGAGGAATTGAGACAAGTGATTCCTTGCACTCAATCCTTTTGAGAAGATCCTT CCAAGAACTCAGCTCATCAAATTTTACATCCCTGCTGAACATGATCTGGTTTGTCACAGGGTGCATCAACTTGTATGATCCTGTTGGATGATATCCAACA AACACCATCAACTCACTCCTATCATCCAATTTCTTTCTGACTTGCTCAGGTATGTGTCTATAGCAGAGTGATCCAAACACTCTTAGATGATTTACTGATG GTTTCTTCCCTGTCCATACCTCTTCTGGCACTACTTGACTCAGGCTTTGTGTTGGACACCTATTAAGGACATAGGTTGCTGTATTAACAGCTTCACCCCA AAAGTTTTGTGGCAAACCTTTGCACTTGAGCATACACCTCACCATGTTCATCACAGTTCTGTTTCTTCTCTCAGCCAAGCCATTGTATTGTGGAGTGTAT GGAGGAGTGACTTCATGAATGATGCCATTGATCTCACAGAATTGTTCAAATTCTCTAGATGTGAATTCCCCCCCTCCATCAGTCCTCAATACCTTAAGAT GCTTCCCTGATTGTTTCTCAGCCATCACCTTGAACTTGTTGAATGTGGAAAACACCTCACTTTTAGCTTTAATAAGGTAGAGCCACATTTTCTTGCTGAA TTCATCTACAAAAGAAACAAAATACTTGTTTCCACCCAATGTAGGTACCTCAATTGGTCCACATACATCTGAGTGTACTATATGCAACAGATCCATAGCT CTAGCTTGTACATGGTTGCTAAAAGAGTTTCTGGCATGTTTACCTGTGATGCAACTTTCACACTCAGTTTGTTGAGCCTTAATTTCAGGGAGACCAGTCA CCATATTCTTGGATTTCAATTCTTCAAGATCTCTGAAATTGAGGTGTCCATACCTGAGATGCCACAACCAGGCTTCATCCTTTTTCATTACTGAATTCAG ACACTGAGAGTCTTTTGTGCCTAGCTTGATTTGGAAGGTTCTGTTGCTTGCTAAGGGAGCTTCCAAGATCAATCTTCTCTGTTTATCAAAAATAGTCATG GAGCCATCAAGCAATTGCATAGTGAGGCCCTTTTCATGAAGCTGACCAATGCTGATCAGGTTGGTCTTCATACCAGGCACAAACAGCACATCTTTAATAT GTGCTTTCTTGCCATCACTCATGATTAGAGGTACATCACCTGTTCCTTCTGCTGTAATGACCCTGGCATCTGCAAACTTCACCTTGCTTCTCTTATTTGA GTCAAAATTGACTAGCCATTCCTTATTTCCAGTCATGTGGTTAGAGCAACCAGAATCCAAGTACCATGTGTTGCTTTCACCACTTAGGCTAGTTGTCATC ATGAGTTGGACAGCAATCTCCTCACCTTCATCATCACCATTCTCAGCAAGATTTGCCTCAGGTTGGTGACTCCTATTAAACTCCTTCTTCTTAGGTGCTT GACACTCAGAGGAGAAGTGTCCAATCTTATCACAATTGAAGCACCTCACCTTCTTTCTGTCCACCTTTTTCTTCCAATTTTTGAACTGTTTTCCACCTCC TGAAGATGATTCTGAGTGATCATCACTAGTATTTGTAATTCTAGCTGGTGAGAATCTCCTTGTGCCAACCTTCTTTCTGCTTGAAGTCTCTCTTCTTGAG AATTGAGAATGAGCTTGCAGCACCTGGTGACTATGTCTATCACCATTTCTTTCATTCAACCTTTGCTCATGGGCTTCAAGAGAGCCTTGGAGATCTTCTA ATCTCATCTTCTCCATCTTTCCAGTTTCCTCAATTGCAACAACCACATTATCAAACCTTGGTGTCACTGTTCTCATTATCTTTTCCACAATCAGAGCATC ACTCATTCTTTCACCACATAGCTTCATGAGATTAGTATGAGTGATGACTCTAGTAAAGAATGCAGAGATTTTTTCACCTTCTTCCATCTGCATCAGCTCA TATTTCCTCCTCATAGTCTGCAACTTAATCTTCTTCAATTGAAGTGCACCAGCATAATGTTTCTCCAGAATTTCCCATGCCTCCTTAGAAGTTGCAGCAC CTGCAATCTTCTCAAAGTGTGCATTGTCAACAGCTTGATGTATGAGACACAATGCCCTACAATCTCTTCTTTTGTTGGCTTTGTACTCTTGTTTCTGGAC ATCAGTGGCTCCTTCATCCAATTCCAGAAGTCCATCTTCAACCATGTCTCCTACATCTTGAGCACCAAAGATAGCTTTCATCTTGATACACCATCTTCCC CAATTGGAGCCATCCAGCATAGGTACATTTGTTGAGAAATTTCCTGAGTTTTGTGCCATAGTTTGCAGCGGAATATGTGATCTTGTTTATGCTCTTGATA CCAATTTGTTAAAGCAAGAACACACTGCCAAGAACAGTGGCAGTAGCAGAAAAGAAGAGGAAGGAAGAAAGAAGAGAAAAGAAAGAGTGTGAGAGAGATT GTGATTGAGAGGAAATTAAGAAATAGTGTATGAGTGAAGAATAGTAGTGAATATTGATTAGAAATCAAAGCTATTTATACACTTACTATAAATGGTTAAC AACCATAACTACCAACTAACTAACTATCTATATTTAGAAACTTTCAACTATCAACTAATTTGCATTATTTCTAACATCCTCCCTTAATGCAAATACAAAA ACATCAAAAACAAAACATCAACAGCAACAAGCTTTGATTATCCAACAAAGCAACAAGCTTTGATTATTCAACAATCTTCATCAAACCTAGCATTTCTCTC ATCTTTTCAAACCTTCCTGCCTTCAATGGCTTTGTCATTGCATCTGCAATCTGCAATTCAGTTCTGCAATGAACCAATTCAACCTTCTTCTTATTCACTT GATCTCTTAAGAAATGAAATCTAGTTTCAATGTGTTTACTCCTCCCATGGCTTACTGGATTCTTTGCTAAGTTGATTGCTGATTGATTATCAACCCTCAA CTCAATCTGCATATCTTCTCCACACTTCAATTCTGCCATTACTGAGCTTAACCAGAGACCTTGGCAGGCAGCATTGCAGGCTGCAATGTACTCTGCTTCA CATGTAGAGAGTGCCACCACTTCTTGCTTTCTTGAATTCCATGAGATTGGTGCACCAAAGACAAAGAAAACATAGCCTGATGTGCTTTTTCTATCTTCCT TGTCACCTCCCCAATCTGAGTCTGAATACCCAACAAGTTGATCTTCAAGCCTGTTCTTGTGCTTCTGTCTTGGAAAAAGTATGCCATAATCCAAGGTTCC CTTCAAATATCTCATGATCCTCTTTGCAGCCATCACATGAGTTGTGCAAGGATTAGCCATGTATCTACTAATCACTCCTGCACCATAAGCCAATTCTGGC CTGCTGTGACACACAAATCTGAGACATCCCACCATCTGCCTAAACATTGTTGCATTCACCTGTTCTTTAGCCTCATTAGTGCTTGATTTTTCCAACTTGC TGCTGCCTTCAACAGGAACTGAAGTAGAGTTGCACTCATTCATTTCAAATCGTGCCAAGACTTCCTTAATGTACTTCTTCTGATGCATTATGATTCCTTG ATCTGTATGCTGAAACTCAATGCCAAGAAAATAGGTCAATTCACCAAGATCAGTCATGTCAAACTCAGACTTGAACTTGTCTTTCAACTTGAGAATCTCA GCCTCACAACTTCCAGTTATGACCAAGTCATCAACATAGAGACAAAGTATGCTGATTTTGTCTGCAATTGATGAGTTGACATACACTCCATGTTCTTTGG TACATTTCAGAAATCCAATTGATGTCAAGAAGAGATCAATTCTCCTATTCCAGGCTCTAGGAGCCTGTTTTAGCCCATATAAAGCTTTCTTGAGTCTGAG CACTTTTCCTTCCTCCCCTGGTTTCATGAATCCAGGAGGTTGTTTTACATACACCACTTCTTCAAGTGGTCCATTTAGGAATGCACTTTTTACATCAAGC TGCCACAATTTCCAATTTTTCCAACTAGCTAATGCAACAATCAGCCTTACAGTCTCAATTCTTGCAACAGGAGCAAAGACTTCTGAGTAGTCATACCCTT CCCTTTGCATGAAACCTTTTGCCACTAGCCTAGCTTTGTGTTTGAGTATGCTTCCATCAGGATTTGTTTTGACCTTGTAGACCCATCTTACTGCTATAGG AAACTTATTCTTGGGTAAGTCTGCAATTTCCCAAGTTTCATTCTTCTCTATGGATCTGATTTCTTCCTTCATGGCCTTAATCCACACATCCTCTTTGATT GCTTGAGTAAATGAGACTGGTTCAGCTTCAGCTATAAGTGCAAAGTGAATCAAGTCTCCTTCTTCTGTAACTGCATCATCTCCAAACACCTCATACTCAC TGAGTCTTGCTGGTCTATTTCTTGTTCTGCAAGGCCTGCTAGCTACTTCTGCTATCTCATTTGCTTCCTCTCTGCTGGAAGTGTTGCCT
• Tissue: pods
• Gene name: LI_gene_171646;
• Additional information: details;

Expression of Ll_transcript_455615

FPKM

• PAB: 0.1
• PNAB: 0.3
• PS1: 0.3
• PS2: 0.2
• PS3: 0.2
• PW1: 0.2
• PW2: 0.2
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_455615

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 30.09% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 37.35% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019451907.1)
• Pfam: gag-polypeptide of LTR copia-type (PF14223.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;