Ll_transcript_453845

• Id Trinity: TRINITY_DN49768_c0_g1_i11
• Name Transcript: Ll_transcript_453845
• Sequence: GGAAAGGACAATAAGAGCATGGTGTACACGTGCATATGATTTCAAGTCCTGAAATTTATTACACCCTTCTCTCTCTTTCTTTCTCTTTCTCTGCAAAAAG CACAACTCACGAAGTGAACAAAACAAACTCAGACAGTGAATGAATAGAAGAAGAAAACAGATTCATAATAAACAAAGTGAGTAACCCATAAAAGGAACTG AAACCTTACCCTTCATACTCTATCTTATGAAACCTGTTTTCCTATGTTGTTCTGTTCATTCAGACACTTCAGAAAGAGAGAGAAAGAGTAAATTATTATT CTTAGAGCATGAGTGAAAAGCATCTTCTTCTGCATTCTTTCTTACCTCTCATCAATCATTTTGTTTTTAATGATAAGGTTCTTCCAACCTTCTGCTTCAT TTGTCTGCCATTATTTTCTTCTCTTGTTTCCATCACATGAATTGAAAACCACAACATGACAATGGTTGAAGACTCTTTAGCACCACTCACATTTGACAGA ACTGCTGAACAGGCAATTGTATCTATAAAGAAAGGTGCACACTTACTTAAATGTGGTCGTCGAGGAAAGCCAAAGCTCTGCCCATTCAGACTTTCTCCGG ATGAGAGGAATTTGATATGGTACTCCGGGCAGCAGGAAAAGCATTTGCGACTGAGTGCAGTTACCGAAATTATTCAAAGGCAGGGAAATATAAGGTCCCA TGGACATGAGGAACCCGGAAAGGATGACCATTCAGTTTCACTAATCTATGCTAATGGTGGACGATCTCTTGATCTGATATGCAAGGACAAAGCGCAGGCT GCTTTGTGGTTTGTTGGCTTGAAAGCTGTGATTCCTACGTGCCTGCATCCTAGGCCGTTTAGCAGTTTAAGAAGCTGCAAAGGGGTGCAGAGTTGTGTTA GTAGTCCAGCTGGAATCTTCCGAAGAAAGAAAAATCTTGGCCTTCTGGATGAATCTTCTCAACTAACACAGGTACATAGTGTATGTGCAAGTCCTACTTT GTCACTTTCAGAAAGGTGCTTTTCGGATGGCTTGTCATATACATCTGATAACATTTATTCCAGAACTAAAGGAGTAATAGATAATTCAGTCCCAAGTTCG TCATATATAGATGCCGGCATTCTTAGTAAGGTTGAACCACTGCATCTTGACAGGGAGTACAAGAAAATCTTGTCCTATAGGTCTCTGATGCCTCCTGCCT CCCCGCGTATACGAAATAGCAATGTATTAAGGGATGTGATGGTATGGGGCGGAGGTATTGGAGGTCGTTTAGGGATTGTGAATGAAAGGTTTGTCAATCA ACATGGGATTTATTCTTTAGTGCCGAAGTTATTGGAATCGACTATGATGTTAGATGTACAAAATATAGCTCTAGGAAGTAATCATGCTGCCTTGGTTACA AAACAAGGTGAAGTTTTTTGCTGGGGTCAAGGGAAGTGGGGGAGGCTGGGGCAAAAAATTGATATAGACATTTGCTCTCCAAAACTAGTTGATTCTCTGA ACGGGATGCATGTAAAACATGTTGCCTGTGGCGAGTATCATACATGTGCTTTGACAGATTCGGGTGAAGTATATACATGGGGGAATGATGCTTGTAATGC AGATTTGGGTGATGAATGGAGAACTAGAAGTCAGTGGATACCGCATAAACTTTCTGGTCCTTTAGATGGTATTAGCATTTCGAGTATTGCTTGTGGGGAA TGGCATACTGCAATTGTCTCCATCTGTGGGCGGTTATTTACATATGGAGAAGGTACGTTCGGAGTTCTTGGGCACGGCAGTCTTAGGAGCTTTTCTCAGC CTAAAGAAGTCGATTCTCTAAGTGGTCTTAGAGTGAAGTCGGTGGGTTGCGGATCATGGCATACAGTAGCTATTGTTGAAGTCATTGCTGACCGTTTTAG GTATAATACTGCAAGTGGTAAGCTGTTTACATGGGGTGATGGAGATTATGGGAGGCTCGGTCACGCTGATAATGGAAGAAAGCTTATACCAACATGTGCT TCACAACTTGTTGACTATGATTTTGTTCAAGTGTCTTGTGGAAGAATGTTTACTGTTGCACTTACGACTATGGGCAAAGTTTTTGCAATGGGAAGTACGA AATACGGACAGCTGGGAAATCCACATGCTAGGGGCAAAGCAATTATGGTTGAAGGACTGCTTAAACAAGAGTTTGTTAAAGTGATTTCATGTGGTTCATA CCATGTTTCTGTTTTGACTTCTGCAGGGAGTGTCTATACATGGGGAAAGGGTCAAAATGGTCAACTCGGGCTAGGCGATACCGAAGATAGGAATACACCT TCTTTCGTTGAAACTCTAAGAGATAGGCATGTAGATACTATAACTTGTGGCCCAAGCTTCACAGCCGCAATCTGTTTACACAAACCTATTTCTATCAGTG ACCAGTCAGCTTGTAGTGGTTGTAGGTTGCCGTTCGGGTTCACACGGAAGAAGCATAACTGTTATAACTGTGGACTTCTGTTTTGCCATGCTTGTAGTAG TAAAAAAGCTAAAAATGCATCTCTAGCCCCAAGTAAGAGCAAGGCTTTCCGGGTGTGTGATCAGTGCTTTGATAAACAACAAGGAAGTACCTATTCTGGA ATGGCATCAAAGTCTAGAAGTCACAACAATCAGCAGGTGCTGAAGCATCAAAACAAATTTCCCTATCTCACTGAAGATAGGGGAGAAACAACAGTGACAC AGGGTCCATTATTATCTCTTAGTCAATCATGTTACAGGAAAAGCATGCCGAGTGGACGGAAGGCCTGGGAAAACCAACAAGGAAGCCAGCAGCACTTGGA AGATAGTTCTTCGACATTTAATGGAGTGTCGCGATGGGGGCAGGTTCCATGTCCAGACTTCTTTAACGTGAATTGTACAAAAAAATCAGCTATGCATGTT TCTTCATGGAAACATAAATCAGCTACTGTTTCACCATTGAATACAGAATCTGCAGTATGCAACCTCCCTGTTGCTGAGACAGATACAACAAAGTCAGATA AGATGCTCATAGAAGAAGTTCAGAGGCTGAGAACTGAGGCTCGGAGACTTGAAGAGAAGTGTGAGCTGAAAAACCAAAAAATACTAGAGTGCCAACAAAA AGTTGAGGAGAGCTGGCTTGTGGCTAAGGAGGAAGCTGCCAAGAGCAAAGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCATACATTGTCA GAAAAAGACAATGGTGGACAAGAAGAAAAGGTTATACATGAATGTCCACCTACTTTGGCACACATACAAACAGATATCAAGAGTCCAAAAGTTGGCAACA TTGACAGTCTATCTAATTCCCCAATAGTATTTTCTGATACAGTAAAATCCAAATTTGGGAGAGGTATGCTCCTAAAAAATGATAAATTATTGGAGAACTC TAACTTCAATAGTGCAGAACCACAAGAAAGCAGCGCCGACGGCTCGAAGGCTGAATGGGTAGAACAGTATGAGCCCGGTGTTTACATCACATTAACAACC TTATCAAGTCAGAAAAAAGGCCTTAAGCGAGTGAGGTTTAGCCGGAAACGATTCTCCGAGAAGGAAGCTGAAAGGTGGTGGGAAGAGAATCAAGCTATAG TATACCATAAGTATGATATTGAAGGATATACAAACACTAAACAAATTCAGTTGAAAGGCTGATTTTTTTTATTTGCCATTCATTTTTAGTAGTTTTCTCT AAAGTTATTGGTTGGTGGTGAGAAGTTTGCCTCAGGCTCTAGATTCTCTTGTATCTAAGCATCCTTTGCTCAATAGTGTGTTGGGGCATTCCATCTTGTG TACATACACCAATAACAGAGTGTCTCTTGGTTTTATTTTAAGGGTTATTCTACTAAAACTGGTCTATTTTATTTCTACTATATAAGAAAAATGATGTATC CTCTTATAAAACCATCCTACAAAGTTTCC
• Tissue: pods
• Gene name: LI_gene_172043;
• Additional information: details;

Expression of Ll_transcript_453845

FPKM

• PAB: 0
• PNAB: 3.9
• PS1: 2.2
• PS2: 0.3
• PS3: 0.7
• PW1: 1.1
• PW2: 0.3
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_453845

• Blastp: PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 41.42% of identity
• Blastx: PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 41.39% of identity
• Eggnog: regulator of chromosome condensation(COG5184)
• Kegg: Link to kegg annotations (AT1G76950)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019439523.1)
• Pfam: Regulator of chromosome condensation (RCC1) repeat (PF00415.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;