Ll_transcript_454850

• Id Trinity: TRINITY_DN49777_c3_g1_i16
• Name Transcript: Ll_transcript_454850
• Sequence: GCTTACAGAAAGATGCCATTTGGATTATGTAATGCTCCTACAACTTTTCAAAGATGCATTTTGGCTATCTTTGCTGACTTAGTGGAGAAGTGCATCGAGG TCTTTATGGATGACTTTTCAGTATTTGGAGACTCATTTGATGGTTGTCTGAAAAATTTGGAAAGAATATTAAAAAGATACGAGAAAACTAATCTTATACT CAATTGGGAGAAATGTCATTTCATGGTCACTGAAGGAATTGTACTTGGGCATAAAATCTCTGCAAAAGAATTAGAAGTTGACCGAGCCAAGATAGAAGTG ATTTAGAAGCTGCCTCCTCCAACGAATATAAAAGGAATAAGGAGCTTTCTTTGTCATGCTAGTTTCTACCGCCGGTTCATCAATGACTTCTCCAAAAAAG CTACGCCCTTGTGTAATTTACTTTTAAAAGATTCTCATTTTAATTTTGATAATTCATGTTTAGAAGCTTTTAACCTTTTAAAAGCATGCTTGGTTTCTGC TCCCATAATAACTACACCAAACTGGGAATCACCCTTCGAACTTATGTGCGATGCCAGTGATTACGAAGTTGGTGCAGTTTTGGGACAGAGAAAAGAACGG GGTTTTCATGCATGAAAAGTTTTAAACGAAGCTCAAATAAATTATGCAACAACTGAAAAAGAACTGTTACCTATAGTGTTTGCATTGAAAAAGTTTAGAA GTTATCTGATTGGGGCTAAAACAATTGTTTATACTAATCATGCCGCAGTCAAATACCTTCTAAAAACCCGATTCAAAGCCTCGGTTAATACGTTCGGTTT TGCTATTGCAGAAATTTGATTTGGAGATTCGCGACAAAAGCGGAAAAGAAAATCAAGTGGCAGATCATCTGTCCCGCTTGATAAATGAAAATGTCGTATT AAAAGAAAAAGAAATAGCTAAAACATTTCCTGACGAGAAGCTATTTCAACTTCAGGACAGACCATGGTTTGCTGATTTTGCAAATTACAAAGCTTCAGGT ATAATCCCTGAACATTTTAACTATCAGCAGAAGAACATTTTTCTCAAAAGGGTAAAAGATTATATTTGGGACGAAACTTATCTGTTTAAGGAAGGAAACG GCAATATCATAAGACGATGTGTTGATGAGTCTGAGGCCCAGAAAATATTATGGCATTGTCATAATTCGGCCTACGGGGGACATTATAATGGGAATAGAAC AGCGGCCAAAGTACTCCAATCCGGATTCTTTTGGCCGACAATCCATAAAGATGCCAATTTACATGTACAAAAATGTGATGCATGCCAAAAATTTGGGGGA CTGAGTAAAAGAAGT
• Tissue: pods
• Gene name: LI_gene_172106;
• Additional information: details;

Expression of Ll_transcript_454850

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0.2
• PS2: 0.2
• PS3: 0.1
• PW1: 0.3
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_454850

• Blastp: Retrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 41% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon opus from Sophophora with 38.6% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_014622146.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078.26)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;