| Id Trinity | TRINITY_DN49777_c3_g1_i21 |
|---|---|
| Name Transcript | Ll_transcript_454856 |
| Sequence | GCTTACAGAAAGATGCCATTTGGATTATGTAATGCTCCTACAACTTTTCAAAGATGCATTTTGGCTATCTTTGCTGACTTAGTGGAGAAGTGCATCGAGG TCTTTATGGATGACTTTTCAGTATTTGGAGACTCATTTGATGGTTGTCTGAAAAATTTGGAAAGAATATTAAAAAGATACGAGAAAACTAATCTTATACT CAATTGGGAGAAATGTCATTTCATGGTCACTGAAGGAATTGTACTTGGGCATAAAATCTCTGCAAAAGAATTAGAAGTTGACCGAGCCAAGATAGAAGTG ATTTAGAAGCTGCCTCCTCCAACGAATATAAAAGGAATAAGGAGCTTTCTTTGTCATGCTAGTTTCTACCGCCGGTTCATCAATGACTTCTCCAAAAAAG CTACGCCCTTGTGTAATTTACTTTTAAAAGATTCTCATTTTAATTTTGATAATTCATGTTTAGAAGCTTTTAACCTTTTAAAAGCATGCTTGGTTTCTGC TCCCATAATAACTACACCAAACTGGGAATCACCCTTCGAACTTATGTGCGATGCGAGTGATTATGCAGTTGGTGCGAGTTTGGGACAGAAAAAAGAAAGG GTTTTCCATGCCATTCACTATGCTAGCAAAGTTCTTAACGAAGCACAAATAAATTATGCAACAACTGAAAAAGAACTGTTACCTATAGTGTTTGCATTGA AAAAGTTTAGAAGTTATCTGATTGGGGCTAAAACAATTGTTTATACTAATCATGCCGCAGTCAAATACCTTCTAAAAACCCGATTCAAAGCCTCGGTTAA TACGTTCGGTTTTGCTATTGCAGAAATTTGATTTGGAGATTCGCGACAAAAGCGGAAAAGAAAATCAAGTGGCAGATCATCTGTCCCGCTTGATAAATGA AAATGTCGTATTAAAAGAAAAAGAAATAGCTAAAACATTTCCTGACGAGAAGCTATTTCAACTTCAGGACAGACCATGGTTTGCTGATTTTGCAAATTAC AAAGCTTCAGGTATAATCCCTGAACATTTTAACTATCAGCAGAAGAACATTTTTCTCAAAAGGGTAAAAGATTATATTTGGGACGAAACTTATCTGTTTA AGGAAGGAAACGGCAATATCATAAGACGATGTGTTGATGAGTCTGAGGCCCAGAAAATATTATGGCATTGTCATAATTCGGCCTACGGGGGACATTATAA TGGGAATAGAACAGCGGCCAAAGTACTCCAATCCGGATTCTTTTGGCCGACAATCCATAAAGATGCCAATTTACATGTACAAAAATGTGATGCATGCCAA AAATTTGGGGGACTGAGTAAAAGAAGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_172106; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_454856
| Blastp | Retrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 41% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon opus from Sophophora with 39.3% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_014622146.1) |
| Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078.26) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |