Ll_transcript_342560

• Id Trinity: TRINITY_DN49826_c5_g1_i1
• Name Transcript: Ll_transcript_342560
• Sequence: CCAAATATCCTTCTTTCCTTTCTCTGTTCCTTTTAGCTTTACCCTTTTGTGCATCTCCTCCATTATATTCTATAATGGCTCCTATTCCTCTTCATCTTCA ACCTCTATCTTCCTCTGCTGTTTTACCTTTATCTTTAGCCTTTCTTTTCCTAGTTTCCCTTCAATGCCATGTAGCCTCTTCAGCTCTGATACTAAGCTTG AGACACCAGCATAACCAACTCCACCATCAGAGACCCATGATCCATTCCAACCAAACAAACTGTGAACTGTTTATGGGAACTTGGGTCCGTGATGACACAT ACCCTCTTTACCAATCTTCTAGTTGCCCCATCATAGATCCAGAGTTCAATTGCCAAATGTATGGTCGCCCAGATTCTAATTATCTCAAATATCGATGGAG ACCTCTAAACTGTGAGCTCCCAAGGTTCAATGGGGTTGAGTTTCTGCTTGGAATGAGAGGCAAAAGTGTGATGTTTGTTGGAGACTCTCTTGGGAGAAAC CAATGGCAGTCATTGATTTGTATGATATCTGCTGCAGCACCTCAGACACAAACCCAACTGGTCAGAGGAGAGCCACTCTCAACTTTCAGATTCTTGGATT ACGGTGTGACCATATCATTTTACAGAGCTCCTTATTTGGTAGAGATTGATGTGGTCCAAGGGAAGAGAATTCTGAGGCTGGAGGAGTTAGATGGGAATGG TGCTGCGTGGAGGAGTGCTGATGTGCTGTCATTTAACACTGGACATTGGTGGAGTCATCAAGGTTCTCTTCAAGGGTGGGATTACATAGAATTAGGAGGC AAATACTACCCAGACATGGATCGTTTGGCAGCATTGGAAAGGGGTATGAAAACATGGGCTAATTGGGTGGACACCAATATTGATAAAAGCACGACCAAAG TGTTCTTCCTGGGAATTTCTCCCTCACATAACAACCCAAGTGAATGGAACACCGGAGTGACAACAGTAACGACAAAGAATTGCTATGGCGAAACTGAACC AATCACCAGTTCTGGATACACCGGTCCATATCCAGATCAGATGAGGGTTGTGGATACAGTGATTAGAGAAATGAACAACCATGTTTATCTTCTTGATATT ACAATGTTATCAGCATTTAGGAAAGATGCTCATCCATCAATATATGATGGTGATTTGAGTCCAGAACAGAGAGCTAAACCTGACTACTCTGCTGATTGTA GCCATTGGTGTCTTCCTGGGTTACCAGATACTTGGAATCAACTATTTTATACGGCTTTATTCTACTAATTTTGAGTTTTACTTGCTATAGTTATTAACAA GTTCATTCACTAATTTTTGCCCCCTTATTTATATAACTCTTAGTGGGCAATGCATTTATTTGAGAGGGTTGCGTGATAGCAACTGTTTCATTGTAAAGAT ATGCTAAGCAAACAAGAAAAGGAGCTTTCTTTTTCTTTATTCTATTGTTGTTCTTTATTCTATTAATGTCAATAGTAAATTTTTGTATAAATTTCCAAGT AAAACTGAAAAAGTTATGGCTTTCCTTTTTTTGGGAAATTAATATGTTGGAT
• Tissue: pods
• Gene name: LI_gene_172533;
• Additional information: details;

Expression of Ll_transcript_342560

FPKM

• PAB: 3.3
• PNAB: 9.6
• PS1: 11.8
• PS2: 6
• PS3: 8.6
• PW1: 6.8
• PW2: 4.3
• PW3: 2.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_342560

• Blastp: Protein PMR5 from Arabidopsis with 58.61% of identity
• Blastx: Protein PMR5 from Arabidopsis with 61.74% of identity
• Eggnog: Pfam:DUF231(ENOG410YF78)
• Kegg: Link to kegg annotations (AT5G58600)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019420088.1)
• Pfam: PMR5 N terminal Domain (PF14416.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;