| Id Trinity | TRINITY_DN49826_c5_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_342564 |
| Sequence | CCAAATATCCTTCTTTCCTTTCTCTGTTCCTTTTAGCTTTACCCTTTTGTGCATCTCCTCCATTATATTCTATAATGGCTCCTATTCCTCTTCATCTTCA ACCTCTATCTTCCTCTGCTGTTTTACCTTTATCTTTAGCCTTTCTTTTCCTAGTTTCCCTTCAATGCCATGTAGCCTCTTCAGCTCTGATACTAAGCTTG AGACACCAGCATAACCAACTCCACCATCAGAGACCCATGATCCATTCCAACCAAACAAACTGTGAACTGTTTATGGGAACTTGGGTCCGTGATGACACAT ACCCTCTTTACCAATCTTCTAGTTGCCCCATCATAGATCCAGAGTTCAATTGCCAAATGTATGGTCGCCCAGATTCTAATTATCTCAAATATCGATGGAG ACCTCTAAACTGTGAGCTCCCAAGGTACAAAGAAATAACACCACTCCCCAAGAGTCTGTTCAGTTGTTAAAGCTGTGAAACTTTAATCCAGCATCTCTGA AGATAATGTTTGCAAGTTGAGTTTTGGAAGGGAATGAGAATAGACTATTTTGCAAGTGTATTTCATAGCCCTTTGAGTCTTTCTCTTTCTTCCATTACTC TCTAAAAGCCAACTTGAAAAAAAAAATTAAGGTCTGTTTGTGAACTGAGTTTTGGAGAGGAAGAAAGAGAAGATATCGAAAGTCATAAAATACACAAGTG AGATGACTCTGGAGTCTTTATTTTTCATTCATTCCGCTCCAAAACTCAACCCAACTCGCAATCAGACCTTAAGTGCTGGTAGCATTAAAGGATGTCTTAG AGTAGAAATTTGTTGCGTGTGCTGAATGGTTTTGTAGCATGTTGTTGGTAGGTTCAATGGGGTTGAGTTTCTGCTTGGAATGAGAGGCAAAAGTGTGATG TTTGTTGGAGACTCTCTTGGGAGAAACCAATGGCAGTCATTGATTTGTATGATATCTGCTGCAGCACCTCAGACACAAACCCAACTGGTCAGAGGAGAGC CACTCTCAACTTTCAGATTCTTGGATTACGGTGTGACCATATCATTTTACAGAGCTCCTTATTTGGTAGAGATTGATGTGGTCCAAGGGAAGAGAATTCT GAGGCTGGAGGAGTTAGATGGGAATGGTGCTGCGTGGAGGAGTGCTGATGTGCTGTCATTTAACACTGGACATTGGTGGAGTCATCAAGGTTCTCTTCAA GGGTGGGATTACATAGAATTAGGAGGCAAATACTACCCAGACATGGATCGTTTGGCAGCATTGGAAAGGGGTATGAAAACATGGGCTAATTGGGTGGACA CCAATATTGATAAAAGCACGACCAAAGTGTTCTTCCTGGGAATTTCTCCCTCACATAACAACCCAAGTGAATGGAACACCGGAGTGACAACAGTAACGAC AAAGAATTGCTATGGCGAAACTGAACCAATCACCAGTTCTGGATACACCGGTCCATATCCAGATCAGATGAGGGTTGTGGATACAGTGATTAGAGAAATG AACAACCATGTTTATCTTCTTGATATTACAATGTTATCAGCATTTAGGAAAGATGCTCATCCATCAATATATGATGGTGATTTGAGTCCAGAACAGAGAG CTAAACCTGACTACTCTGCTGATTGTAGCCATTGGTGTCTTCCTGGGTTACCAGATACTTGGAATCAACTATTTTATACGGCTTTATTCTACTAATTTTG AGTTTTACTTGCTATAGTTATTAACAAGTTCATTCACTAATTTTTGCCCCCTTATTTATATAACTCTTAGTGGGCAATGCATTTATTTGAGAGGGTTGCG TGATAGCAACTGTTTCATTGTAAAGATATGCTAAGCAAACAAGAAAAGGAGCTTTCTTTTTCTTTATTCTATTGTTGTTCTTTATTCTATTAATGTCAAT AGTAAATTTTTGTATAAATTTCCAAGTAAAACTGAAAAAGTTATGGCTTTCCTTTTTTTGGGAAATTAATATGTTGGAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_172533; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_342564
| Blastp | Protein PMR5 from Arabidopsis with 61.54% of identity |
|---|---|
| Blastx | Protein PMR5 from Arabidopsis with 61.7% of identity |
| Eggnog | Pfam:DUF231(ENOG410YF78) |
| Kegg | Link to kegg annotations (AT5G58600) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019420088.1) |
| Pfam | GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p (PF13839.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |