Ll_transcript_341542

• Id Trinity: TRINITY_DN49877_c5_g1_i10
• Name Transcript: Ll_transcript_341542
• Sequence: AAAAAACTCAACACCTTTTCTCATTAAAACTTTTATGATGAATTTAAAATTTATGATCAGAATAGAAATGTACCTTTTTTGTTAAGATATAATAAACCTT TTCACTTTGGGATTTATTTTTGGTTTCTAGCTTTTAGGGTTTGGGAATCAACACTTGGTAGCAATGTCCAATCATCACCGTTCTTCGAGCGCTTCCTCGA AGAACGGTCTTCCTCCTCAAGAACTCCTTGACGATCTCTGCAGCCGGTTTGTGTTAAATGTGCCGAAGGAAGACCTTCAGTCATTTGAAAGGATCTTGTT TCTCGTGGAGAATGCACATTGGTTTTATGAAGATAATTCTGTAGAAAATAATCCATCTCTGAAGTCATTAAGTCTGAAGGAGTTCACTTCATTATTGTTC AATACTTGTGAAGTTTTGAAGCCTTACGTGGCCCATATTGATGATATATTTAAGGACTTCACTTCGTACAAGGTTCGAGTTCCTGTAACTGGGGCAATTA TTCTTGATGAAACTTATGAAAGGTGCATACTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTTCCTCGTGGCAAAAAGAGCAAAGATGAAGAAGATCA TGCATGTGCCATTAGAGAAGTCATGGAAGAAACTGGTTTTGATGTTTCAAAACTTCTGAACAAAGATGAATACCTTGAAATCATTTTTGGACAACAGAGA GTGAGGCTTTACATTATTGCTGGTGTGAAGGATGATACAGCATTTGCCCCACTTACCAAAAAGGAGATCAGTGAAATTGCATGGCATCGGCTTGATGAAC TTCAACCAGCAAGTGGTGATGTGATATCTCGTGGGATCACTGGCCTCAAGCTTTATATGGTGTCCCCTTTTCTGGCGTGAGTACTACTTCATATGATTTT GATAGCTTTGGTGAATGTCCCGTGTCTTGTCAAAGTTCAAAAAGATTCACTGCCTTCATGCAGATCATTGAAATCTTGGATTTCGTCGCACCAACCTCCT ATGGCTCCAAGGCTTGATTTGCCTCTTAAAGGAATTTGCGTGTGGAAAGCAAGGAACAGTCCTATCGGAAGTAGCTCGATGATAATCGACAGCCAGCCAA CAAAACCTGAACCTGATTCTCACTCTATTGATGTGGGGCCTGGCAGGAGCTTCAGGAATTTCAAATTTGACACTGCTTCAATTTTACAAGCAATGGAAGC TGCATTTTCTTCTTGAAGGTCCAGCAACCTTCCTGTAAAGTTTCCTTAACTGAATTGATTTCTTCATTCATATGTCAAAGTTGTTACTAGTCGCTCTTAA TGGTAATTAGGTAGTAGCTGTACAAAATGTCTGCTGGGAGAGTTAGCTCCATATACTTGTGGATGTTCCCAGCTCGGACAAGATTGCCTCCAGTGTGAGG ATACCTGTGGGAAACCAAAAAAGGTAGTAGCTGTACAAGCTGTACATGACGTTTCTCAAGTTGTTTTTGGTTGAGTAGTATGTACATTGTGTACATGAAG CATTTGTGGCTAAATAGTATTTGTCAGTTCATGTAGAAAACTAGAAAAATAGTTCAATGTTGAAGTTATCCTCCTCCCTTATTTTGCACTCTTCGTTAAC TATGAAAAATCTTTAAAGTGTAGTGTTTCATTTGTCACTGAATTTTATAACACAGTTTCCCACCCCTGGTGTCCTTTTTTGGTTTGATAATTTTATCTTT GATTTATGCATGGAATCAATTTTATTTACAATGGCACTTGGTATAAAGTACATATATTCAAACCTTTGAGAGGATCTTGAAATTATGGTGACCTTTTCTT CTAAAACTAATGAAATACTTATGATTGTTAGAGACAAGGATGTGGCATTATTAAAACTTAAATAGTTAAGAGATAGACTCTTCCAACTGTTGTTTACTGT TTCAGAGAGACTACGCTCCCATCTGAAGATGAAGGACACAATATTGCTGAGACACGTTTTGATGCACCTTGATGTAAACTTTTATATAATATGGTATGAC ACTCTAAATTGATCTCAACTTGTAAATGGCTAGACGAATGGTCCATATAAAATTTTATTGTGGACCAAAAATGTATCACAAATGGAATGGTAGGGTACAA TTTTATATAACCGAAAGTGAAAAACTTATTAACTATAAGGGTAATGTATACACATATTTTTTCAGGTCTATAACACCCTCAAGAAATTGTGGCTTGCAAC TGTTTATACAAATAATAGAAACTCTGCTATAGTCATTTATATATATTCAGTACACTTTGTGGATAGAAGAAGATAGAAGAATACAGTTGAATATAGTAAA ATGGG
• Tissue: pods
• Gene name: LI_gene_172939;
• Additional information: details;

Expression of Ll_transcript_341542

FPKM

• PAB: 0
• PNAB: 0.6
• PS1: 0.8
• PS2: 0.4
• PS3: 0.6
• PW1: 0
• PW2: 0.5
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_341542

• Blastp: mRNA-decapping enzyme subunit 2 from Arabidopsis with 80.83% of identity
• Blastx: mRNA-decapping enzyme subunit 2 from Arabidopsis with 58.96% of identity
• Eggnog: Nudix hydrolase(COG0494)
• Kegg: Link to kegg annotations (AT5G13570)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019449802.1)
• Pfam: Dcp2, box A domain (PF05026.12)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;