Ll_transcript_343117

• Id Trinity: TRINITY_DN49884_c5_g4_i1
• Name Transcript: Ll_transcript_343117
• Sequence: CAAGCAATTCAGTGTCCCACTTCTTTCATGGTCTACACAACCACTCTTCTAGAAAGAAGAACATTAATAAATATGCTCTTCCACTAAAGCAAAAATTGAA AATTCAGTATTGCTTAAAATCCAAACCAAGTTGCTTCTAAGTTGTTAATCTACCAATTCTCAGAGGAACACCGAAAACTCCAATCCGGAACCTTTCTGAA TCCCCAATTCTGCACTTCTTCAATTCATCGCGTAAGTTACAATTTTGCTATGAATTAACCCAATTCTCACGCCAATTCGTCTCATTTGTAACTCTAAGGG TTTCGTTTCGCTTCCGAGAATTCGAAATTTAGAAACTCTGGACAAATTCGAAACCCTAGTTGGGAGATGATTTTGTAAAATTCGGGGTGATACAAGATTG GGAATGAAGACGCTAAATGGCTTATTTGGTGCAAGGCGCAGAAGGATTCATGGAGTTTTCAATGGCCTTTGTGCTATGCTTGTGTTTTTCTTCTTTTACA ATCGTGAATATATTATTCGAAACCCTCTTCTTAAGCAATCCACATATTTGGGGAATGATCAAAATTCAATTTTGAGAAATGGGCATTCTCACATTGCTGT GATAAACCGTAGAATCATTGAAACTGATCTCAGTGATTCAAGGGTAGTTGGTGAGCCTCATGACAAAGATTTAGCTCTAGGTAGTAGTCCCGGAACCTGT GATGGATTGCTCCACCATGATGGTTATGCTAGCCGATGTGAATTCTTAAAGGTTAATCCGCAATGCTCTTCGGAGGGATATCTTGATTACTTGAGGTTTT TCTTTTGTAAATGTCAAAGTTTTCGATTACTTGGTTATCTAGTATTTGCTCTGTGGCTTGCTGCTTTGTTTTATCTATTGGGGAACACTGCGGCAGACTA CTTTTGCCCGTCTCTTGAGCATCTCTCAAGGCTCTTGAAATTGCCTCCAACTGTGGCTGGGGTTGTGCTGCTCCCACTCGGGAATGGAGCGCCTGATGTG TTTGCCAGTATAGTGGCTTTTGTGGGTACTAAAACAGGTGAAGTGGGTCTTAACAGTGTGTTAGGTGGTGCTCTTTTTGTTACCTGTATTGTTGTTGGAG CTGTTTCTCTGTGTGTTTCTGATAAGGAGATTCAAATTGATCGAAGATGCTTTATAAGGGATGTCAGTTTCTTTATATTCACTCTTGTTTCACTTTTAGT TATTTTGGTTGTTGGTAAGGTCGGTGTTGGGGCAGCGGTTGCTTTTGTATCAATTTATGTTGTTTATGCATTCATTGTTGCTGCCAATGAGATATTGCGG AAACATGCACGTAGGTTGAAATTGGATGCTGTGACCCCATTGCTTCCTGTCCAGGGAAGTGTGTTCTCTCAAGGTTCCGAAGAGGATACTTCTATCTATA GTTCTTTGCTTCACTTAGACACCGAGAATGACCCTCCCCGTCTCCCTCCTTCCTTGCCACAGTGGATGTGGTCTTCAAATGTGGCTATATATTCAAACCA GGGAAATAAAATCACTTTGGATGAAAGGCCTCCTTGGGGATGGAGTGACGAGAGCATGGGAAACACCAGGTTGTCCTTCTCTGTTTCAAAACTTTTTTTA TTGATGGAAATGCCACTGTCAATTCCTAGACGGCTAACAATTCCGATGCTCAATGAGGAAGTATGGTCAAAGCCATATGCTGTAGCCAGTGCTTCATTGG CTCCAATTCTACTGGCCTTTTTATGTGGCACCCAAGATAATATGAGTTATGAGAGTACTATTCTTTCTTATTGTATTGGTGTTACCACTGGATGTACACT TGGTATTCTAGCATATAAATACACCGTGGCTGATCATCCACCGCGCCGGTTTTTGATTCCATGGGTTCTTGGAGGATTCATCATGACCATAGTGTGGTTT TACATAATAGCAAATGAGCTTGTGGCACTATTACTATCATTCGGTGTAATTTTCGATATTAATCCATCCATCCTTGGATTAACTGTATTAGCATGGGGAA ATTCAATGGGAGATTTGATGTCAAATGTTGCATTGGCATTAGATGGAGAAGATGGAGTTCAGATCGCTTTATCTGGGTGCTATGCTGGTCCTATGTTCAA CACACTTGGTGGTTTGGGGATCTCATTGCTGCTTGGGGCCTGGTCAAAGAAACCTGCTTTGTACGTACTGCCTAAAGACAGTAGCTTGTTTTACACCATG GGATTTCTTATCATAGCACTGCTATGGGCACTTATTGTTTTACCACACAACAATATGCATCCTAGCAGAATATTAGGAATGGGTCTAGTTGCCCTTTATT TGATATTTCTCTCTTTCAGGGTGTGCACTGCCATGGGACTCATAACAGTTGCTGGTTTAAGTTGACTTTTCATATGATTGATCTACATTGTAATCTAAGT GCGTATTGTTTCTACATCTCTCTTTCGAACATTAGGCCATGGAATCAAAAAAATCAGGAAAGAAAAAATGGGTATTGAGTACATAGGATCAATCTGGTAG TTCCTTTACATTAGTTGAAAAATGAAATACTTCCTGGATGCCACTTACTGGATCTCTTTATATCTTAGTGTCTTTTATTCAATAAGGAAAAATGTATTAT AAGAGTACAAGGGTGTCTGCCTAATACAATGAG
• Tissue: pods
• Gene name: LI_gene_173000;
• Additional information: details;

Expression of Ll_transcript_343117

FPKM

• PAB: 3.6
• PNAB: 3
• PS1: 3.6
• PS2: 2.8
• PS3: 4.4
• PW1: 1.8
• PW2: 2.3
• PW3: 1.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_343117

• Blastp: Cation/calcium exchanger 4 from Arabidopsis with 60.95% of identity
• Blastx: Cation/calcium exchanger 4 from Arabidopsis with 61.08% of identity
• Eggnog: exchanger(COG0530)
• Kegg: Link to kegg annotations (AT1G54115)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019443562.1)
• Pfam: Sodium/calcium exchanger protein (PF01699.23)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;