Ll_transcript_457682

• Id Trinity: TRINITY_DN49915_c1_g1_i3
• Name Transcript: Ll_transcript_457682
• Sequence: CCCTGAACAGAGGTTCTCATTTCCCAACAACAATGGCGATTTCCCTAAATTTCTAAAACCCTAAAACCCTCTTTTTCTCTGAATTCGCCATGAACTTCGA TCCTTCCTCCGCTTCATCATCACAAGCTCTCAACACTATAAAGGAAATTTCATCTTCCTCGCGAAACATTCCTTCCGACAAGGACTTCAAATTATGCTAC ACCTCCGACGAGTTCAAACGCCCTATCGATGAAATCGCCAGAAAATCGAACTCAATGTTGCAAAAAATCGGCGCCGCGAAGCATATTTGGGGCTCGGAGG AAGCTGGTTTTCCCGTCGGAATCGACGACGCGTATGAATGGCTTGTTGATGTGAATCAAGAGGTTTTTGGACGGGTTGATGAGTCGATTAAGGAGTTGCA GAAGATTATGAAGTTTGAGGATGATGAAATGGAATTGGAAAATGGGAAGAAGAAAAAGATGAAGAAAGTGAAAGTGGAAACTAAGGATAAGGAGAAAGTT TCGTTTCATATATCGGCGATTGAGAAGCCTCAGAATAAGTATAACTTTTTGGTTAATAATGCAAACCAACCTTTTCAGCATGTTTGGTTGGAGAGGAGTG ATGATGATCAGAGGTTTATTCATCCATTGGAGAAACTCTCTGTTTTAGATTTTGTTGATAAAGATGTTGAGGATCTTGTGCCAATAGAACCCCCCTCATT AGAAAGCACCCCTTTCAAGCTTGTGGAAGAAGTCAAAGGATTGAAGGAGTTGGCTGCTAAGCTTCATTCCGTTAATGAATTTGCGGTGGATTTGGAACAT AATCATTATCGGTCTTTTCAAGGTTTGACTTGCTTGATGCAAATCTCAACAAGGACTGAAGATTTTATTGTAGATACCCTGAAGCTTCGCGTTCATGTTG GACCTTACCTGAGGGAACTCTTCAAGGATCCTACCAAGAAGAAAGTCAGATGCTCATGATTGATGTTTCTTTTCATTCAACAGAGTTGTTTCTTTTCTCT TGATCATATTTATGGTTAATTAGGTCATGCATGGAGCAGATTCAGATATTGTGTGGTTGCAACGAGATTTTGGCATTTACGTTTGTAATTTGTTTGACAC TGGCCAGGTTTGTTTGAGAAGCTCTGGATATTCAATATTGAAGTTAATTCCCTGATTAATTATCAAGGAAAGAAAATTCTATAATGAAAAATATAGTTGT TATTCAATATTGTTTAAAATAATTGATCTGATCAGTCTTTGGGTGATAAGGTATGTCTGTTTGCTGCAGTCTTGTAGAAAATGCTTGAAATGCGCCCCAT CATGATGTCCATGTGGCTTTGCTTTTGATTGAGCTTTTGCTTGCTATTCTGATTTAATGACTGTGGAGTTTCTGTAAAAAAATCTTTTCATTTTGGTATA ACCGGAAAGCTTTCCAGGGTTTATATTTTCATGCAATGTATGTGTTGATCTGTTCTGTGGCATTAGAAATGTTGAAACAAACTTTCAAGTTCTTCCGATG TAGATTGTCCTTGTCATAATCTATCCTGCATGCATGTTAGGAATTTATTTTATAATCTTGTTTTTTTATCAAACAAGACTAATATATATTTTTATTGCAT TGTTCAGGCTTCAAGAGTGTTAAAATTGGAGAGATTTAGCTTGCAATATCTTTTGCTTCACTATTGTGGGGTTACTGCAAACAAAGAATACCAGAAAGCA GATTGGAGACTACGGCCTCTACCCGATGTCATGCTGAGGTGCAATTTTTTCCAAGCGTGTCATATTTCATCCTTTTTTATTCTCGTGGTTGTTTCCTTTT CTTATCTTTTATTCTTTATTTACTACTGGCTTTTTAATGTGTATTTTAGCCTCGACTAATAATCGCAGGGTATATAACCTAGATTTCCGGGTATGGGTTT GATTGGTTATTTTAGTTACCATTTTCATCGTACATGGAAGCATTTCACTTAAGACTAAAGAATTTCATATATATTTAAGTAGAACCAGCCATGATCATAC ATATAGATACAGGAATATGTTTCATAATGAAGCTTCTATTCTTTAGGTAGCATCTTCAACACTCAAGGATTTGTGAGCTAGTGGCTTGGATGTGAGCATC CGAGTTAACTAAGAGGTTTTGTTCATATGGGGTTCTATTCTGAAAAGTTATGACAATTTGTCATTCATATGGGATTCATTCTCATTCTAGAAAAGTTAGT AAATAATTTCCTTGTAACAACTTGGCTGCTTGCTAATAATGAAGTCACCATGATGGATATGAAATGGGAATCATGGGGTGTGACTTGTGAGAAAGGAATA TGTGGATTATGGAAATAAAGTATATTTGTGCTTATGGAAATTAGTTGTAAGATGTATGTTGAGTATTAATTAAAATATATTTTGTTATTTCTATTTGAAA TTTGGACTACTTGACTATCAAGTTGGGTTATTTTTTATTGATAGTAGAGTTTCACTGTTTACTTGTTCTCTTAGATACTGAGCCTATGTATTGGAAATAT GATTACTATTTAGTTATTTCTGATTCCCTCCTTTCCATCTTTAGACTTTCCTTCCGTAATCTTTCTTCCTAGTGTCTTTTCCTTTTCCTCTACTGTGTCT ATTTGACCCAAGGCACATCTTACATTGGATTATTTTCAGAATTATACCTACAGTGTGAAAAAAATGGACTAGTTACAAGAATTGGTGATTTCTACTGTTA TAACAAATCTCTGTATAAATTATAATTCCTCCTTGTCTCTCTTCCCTTAATAAAATGAAAAACCAGAACAGTAGTCGAACATTTGAGCTCGTTCTTTTTT ATTCATTTGTGAGTTTTGATTGTAAGCCTAAGGTCTTATGCGGTAATTGATTGTTAGAGGGTGAGCCTCGGCACAACGGTAAGGTTGCTTGCCTTGTGAC TGGAAGGTCATAGGTTCTAAACCCGG
• Tissue: pods
• Gene name: LI_gene_173247;
• Additional information: details;

Expression of Ll_transcript_457682

FPKM

• PAB: 0.2
• PNAB: 0.4
• PS1: 0.3
• PS2: 0
• PS3: 0.3
• PW1: 0.2
• PW2: 0.1
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_457682

• Blastp: Protein RRP6-like 2 from Arabidopsis with 55.74% of identity
• Blastx: Protein RRP6-like 2 from Arabidopsis with 55.07% of identity
• Eggnog: Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides (By similarity)(COG0349)
• Kegg: Link to kegg annotations (AT5G35910)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019458437.1)
• Pfam: 3'-5' exonuclease (PF01612.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;