| Id Trinity | TRINITY_DN50027_c0_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_533088 |
| Sequence | TGTGACGGTTGTCATTAACCAATTGCAAAAACAATTTCAACAAAACGCCAAAGCCAAATCACGGAACAATGAACTTCACCAATCACTTCCTATTGTTCAT GCTTCAATTCATCCTTGTTTTGGGTTGTGCTGCTAACCCAGGGGTGCAATTGGAAATTCAAGATAAATATGTAATCCATTTCAACTATGGTTTCATCTCT AACTATATTTCCCTTCATTCTTTACTATTTAGCTATGTAACTTATATATATATATATATTGGATTTGTTTTTCTCTCTCTTTGTTTTGCTCAGGTTGTAT TGGATAATGGAATAGTTCAGGTTACCATAGCAAATCCTGAAGGATATGTGACTGGAATCCAATATAATGGGGTCGATAATTTGCTCGAAGTTATTAGCAA TGAAACTGACAGAGGGTACTGGGATATGGTATGGGATGAAGGTGGAAATAAAACAACAGCAAAAGGAAAAAAGGGAAAGGGTAGATTTGAAAGGATGGAA ACCACAAATTTGGAGGTAGTAGTGGAAAATGAAGAACAAGTTGAATTATCATTCACCAGAATTTGGAATGCTTCTCTTGAAGGGAAGATTGCACCTTTGA ATATTGATAAAAGGTTTATATTGCTTCGTGGTTCATCTGGGTTCTATACTTATGCAATTTATGAGCATTTGAAGGAATGGCCAGCATTTGATCTTGACAA TACTAGGATTGTTTTCAAGCTAAGGAAAGACAAGTTTCATTACATGGTAGTAGCAGACAATAGACGAAGATTTATGCCTCTGCCTGATGATCGTGAAGAG GGAAGAGGCCAAATTCTGGATTATCCAGAAGCTGTTCTTCTTGTGAATCCCGTGGAACCTGAATTTAAAGGAGAGGTTGATGATAAATATGAATACTCTA TCGAGAGTAGAAATAATCGAGTTCATGGCTGGATATCTACAAACTCATTTGAGCCCACTGGGTTTTGGCTAATTACACCAAGCCCTGAATTCAGATCTGC TGGGCCCCTCAAACAATACATGGCTTCTCATGTTGGCCCCTATTCTCTTTCGGTATTTCATAGTACGCATTATTCAGGATTAGATTTGATAATGAAATTT GGACCTAATGAGCCATGGAAGAAAGTTTTTGGGCCCATGTTCATTTACCTTAATTCTCTATCTAATGGGGAAAACCCAATTACCCTATGGAAGGATGCTA AAAAACAGTTGGTCGATGAAGCTGAGAGTTGGCCTTATACATTTCCAGCTTCAAAGGAACTCCTCTCATCTAAGCAACGAGGTAAAGTCCAAGGTAGATT GCTTGTCCAAGACAGGTACATCAAGGATGCATCCATCCCAGTTAGCGGTGGTTATGTAGGATTAGCATCCCCTGGAAATGCTGGATCTTGGCAAAGAGAA TCAAAGGTTGCCTTCTACCTTCTTTCTTGTCACATTTCCCAAGAAAATGACAATATTGAACCATATGGGAAGAAAAACATGACAATGCTTTCATTTCTTA TAGGGTTATCAATTTTGGACCACTACTGATGATAAAGGCTATTTTTCAATTATTAACATACGTCCAGGGAACTATAATCTCTACTCTTGGGTCATTGGAT ACATTGGTGACTATAAATATGGTTCCATTATTAACATAACGTCAGGTCTTAAAAAATCATGATGCCTTTGTCTTATTGTCCAAAATTTATGTTACTCTTA TTTCTATACTCACTTGGAAAGTAAATGTGTAACATAGGTTCTAACATTAATGTGGGGGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACATTGTGGG AAATAGGCATCCCTGATCGTACAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTCTATGTTAATCACCCAGACAAGTTTAG ACAATATGGCTTATGGGAGAGATATGCTGATTTGTATCCAAAAGAAGACCTAGTTTACACTGTTGGTCTTAGTGACTTCCGAAAAGATTGGTTTTTTGCT CAAGTCTCAAGGAAGAAAGAAAATAACACATACCAAGCAACCACATGGAAAATTAATTTCAATCTTGATCATGTGGATACCATTGGAACCTATAAGTTGC GTGTGGCTCTGGCATCTATACATTATGCAGATCTACAGGTTCGGATAAACAATGCAGAAGCAAACCCACCTTTATTTTCAAGTGGACAAATTGGATCAGA TAATGCCATAGCAAGACATGGAATTCATGGGCTCTATTGGCTATTCAACATTGAAGTACAAGGCAATCTTCTTGTGAAGGGAAACAATACCTTATTTCTA ACACAACCAATTAACACAAGTCCTTTTCAAGGTATTTTGTATGATTATATTCGTTTAGAAGGACCTAGTATGGATCAAACCTATGGGTGATTGTGCCTAG GGTCGAGTTCGAGTTCAAAAATTAGATCCGATCAATATTTAGGGTCAGATATGGACCAAGCATAACCTGTCCCGACCCGTCTCATGCTCACTCATTCATC ATGTTTGTATATGTTTCAATTCAAATGTATACATAGTAATAATTACTATTTTGGTCAAAAAATTTATTGATTTTCTAATTTTTTTTATCATAAAAAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_174095; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_533088
| Blastp | Rhamnogalacturonate lyase from Dickeya with 23.38% of identity |
|---|---|
| Blastx | Rhamnogalacturonate lyase from Dickeya with 24.7% of identity |
| Eggnog | Rhamnogalacturonate lyase(ENOG410YE12) |
| Kegg | Link to kegg annotations (Dda3937_01465) |
| CantataDB | Link to cantataDB annotations (CNT0002172) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019417438.1) |
| Pfam | Rhamnogalacturonate lyase family (PF06045.10) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |