Id Trinity | TRINITY_DN50050_c2_g2_i1 |
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Name Transcript | Ll_transcript_531910 |
Sequence | GAGAAATCAAAGAATGGTTCGTAAGAAGAAAGACAGTGATAGCGACGAAGACGATATCTTCTATTACCGTTACTGTTCTTCATCTTCTTCAAATCAAAAC CTAAACCTAAACCTAAACCCTTCTCAATCTCAATCTCAATCGCAATCTCAATCGCAATCGCAATCGCAAAACAACAACAACAAAGGTTCATCAGTGTTAG CTCCTTCAAAATCCACCGTTTACGTTTCCAACATCGATTACTCTCTCACAAATTCCGATCTCCACACCCTCTTCTCCACCTTCGGCCGCATCGCCCGCGT CACCGTCCTCAAAGACCGCCACACGCGCCAGAGCCGCGGCGTCGCGTTCATCCAGTTCGTCTCTCGCGACGACGCTTGCACCGCCGCTTCCCAGATGCAC CACAAGATCCTCAATGGACGCACCCTCACTGCTTCCATTGCTTCCGATAACGGACGCGCGCCGGAGTTTATCAAGAAGAGGGTTTACTCTGATACCGGTC GTTGTTTCGAGTGTGGGGAGCCGGGTCATTTGTCGTATGATTGTCCGAGGAATCAGTTGGGTCCTCGGGAGCGGCCTGCACCGAAGCGTGTGAGGCGAGG TGGAGGGAGAGGGTTTCGGCGAAATGAGGAGGAGGAGGAGGAAGAAGAGGAGGACGATGGTCGTGGCGGGGAGCGGTTTGAGGATGATAATTGGGCTTCG GTTGTGGATGATAAGGCGGATGAGAGATTGTTGGAGAGGAATGAGAAGGTTGTCGCGAAGAAGGGGAAGAAAGTTGGGTACTTTAGTGATGAGAGTGGAG ATGAAGATGAAGAGTGAATCATGAAATTGAATAGGTTTTCGAAAAAATTGTGGAATAGTGTAATTAATGAGTTTTTATGTTTAAATGATTTTGTGAAATT GGATGGTGATTTAGTACTTGATGTTGGATTTTTTGTTGAATGATGAATTTGAAGTAGGTGTTTGGAGGTATGGTGCAATAGTATAATTTTCGAGTTTTAC GTTTAAATGAATTTGAGCATAGTTATGTTCATGGAAATTGGATGATGATTTTGTACTTGATGTTTAATTGTTTGTTGAATGATGAACTTGAAACAGGTGT TTGAAGGCATTGCGTAATAGTGTAATTATTGAGTTTTATGTTTAAATGAATTTGAGCATAGATTTATGTTCATGGAAATTGGGTGATGATTTTGTACTTG ATGTTGAATGATGAATTTGAAATAGGTGTTGAAGGTATGGTGTAATAGTGTAATTAATGAGTTTTTATGTTTACAAGATTTTGAGCATAGATGTATGTCG ATAGAAATTGAATGATGATTTTGTACTTGTTGTTTTCAATCCGAAATGGGTTTTCGAAGGTTTGACATTATTGTTGAGTATTAAAATCTCTTTCTTGCTG AATGTTTCTTTGGTTTTAGCCTATAATTCATGTATGTTGATGATAGTTTGATCATAGTTTCTGTACATGATGAATGCAGAGGGGGGGTATTTGTTCGAAA AGTTCGAAATGTTGATCCATATGCTAAGGGAATCTTCTTTGTGCTATGTGAATGTAGTAGGTAGTCAGTAGCGGCATAGTGGAGGGTTTCTGCAATGTGA ATAGGCATAATGGCGCAGTTCGGTGGCTTGAAACGGACAAAATCGCGTCCGTTCCCTCTTTTTGTTGTCGATGTTGTCATTCCACACCCCAGAGCTGCAA ACATGAAACCTCTACCGGACATCCTTCTCTGTTTTTTTCTAGCAAGCCACTGTCGGATCCGGTTAGACACTGCATTTTATCCATTAACAGTGTTTTGTTC TCTTGTGTGATGCTGTGTGTATCTCTTTTCATTTTCGGATTGAACTGTGCTAATCTCTTTAACTCTTCCTGTGCTGCTTCACAAATGACAAAGCTCCTCT CGAATTTTATTTCGATTGAGTGCCGGCTGCTCCGCTATCCGATATTGACTAACATAGGTTGAACATTCTTCGATCCATGTAGCTGAATAGTCAATATGCA ACCTTGGCTGTAAATACGTATGAGAACAATTCAACCATCAATCATTGTGGAGTCCCAAAAAGTGTAGCAAACTTGGTGTCATTCCTGTAGAATGCGATTT TCTAGGACAGTCTTTACACTCTCAAAGTGACTCAACTTAGTGAGATTAAAGTTTGGTTGTTGTTATATACTAAAAAAACTCGAAGTCGACTGGGGAAGAC ACTGATAACTAATTTCCGCGACCCAACTTGGCTTTTCATGTGTCAAAAACTCCTCACTTATGTTGCATATAATAGGAAAGAGAGTAGCATCATGAGGATC ATCTCTCTATTTTCCTATAGCTTAAGTGCTTAACCCTTAAAACGAATAAAGAAACAGATTCGTCTTTGACCTCATTGATGATTTTCCTATCGACTTTTTT CGGTATTACTAAAGATATTTCTTCACCTGTTGACTTGTTATATAGTTTTATGCTGAATAATTTTTTGAATCTTTTATGAAA BLAST |
Tissue | pods |
Gene name | LI_gene_174277; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_531910
Blastp | U11/U12 small nuclear ribonucleoprotein 31 kDa protein from Arabidopsis with 53.9% of identity |
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Blastx | U11/U12 small nuclear ribonucleoprotein 31 kDa protein from Arabidopsis with 64.33% of identity |
Eggnog | Zinc finger CCHC-type and RNA binding motif 1(ENOG4111IY7) |
Kegg | Link to kegg annotations (AT3G10400) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019420092.1) |
Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF13893.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |