Ll_transcript_280297

• Id Trinity: TRINITY_DN50105_c5_g1_i5
• Name Transcript: Ll_transcript_280297
• Sequence: CTCTAAGCCTAAGAAGGGGAAGGTTGCTTTGCCTCTCAAGAGGGACATGCTTCGGTCTAAGAGATTCTTGCAAATTCAAAACACGAGGGAGCATAAGAAA GAGTATGACTTGAAGACAGCAATATCATTGGTTAAGGAGACAGCTAAAACAAAGTTTGTAGAAACAGTGGAAGCACATTTCCACCTCAACATTGACCCTA AATATAATGATCAACAGTTAAGAGCCACCGCCAGTCTCCCTAAGGTGAAAGATTCGATGAAGCCAAAAATGCAGGAGCTGATTTGGGTGGAGGAGAAGAC CTCATACAACAGATCAAACAAGGCTTCATGGAATTTGATAAATTAATTGCTTCTCCTGATATGATGCCTAAGATCTTATCATTATCTTCTTTTACTTCCT GTTTACATTTTATCCAATTCAAACCCTTTGAAATTGTTGGATTTTGCCATTAAAGTCACTTTGGCTACTGCTGCACAATCTACTTACTGTATAAGACAAC AAAATTGAAAATGACACATGTCATATTTTTATTACTTTGTTTTCCCTCCAAAAAGATCTTTATGTAACTGTTATCTACTTTCTCAGACCATATCCTTACT TTTTATATTTATTAATTATATAATCTATCTAATAACTATATAAAAAAACTTCTTCAAAACATATGTCACACTTTCCCCCTCCTAAAATCTTCTATTCTAT TATTATATATTTTGACTATTTTTCCACACTACATTATTACCTTTTATATCTATTATTTATATTTTAATAATTTAATGTTTATTAATCATTGACTCATATT TTAATGTCAAGAATGACTATGTGATACTTTTTCCACTGAATTTTAATATCATAGTTCAATTCTTTTGACTTTAACATTTTCCCTATTATAATGAAAAAAA TCAAATTCAAATTTTCCTATTTTCATAGAAAAGTTAAATTCAAACTTGACTAGACCATTTCATTTTTTACAAGTTAAACTATTTATTTTCAAAAAATCAC AAAGTATCATGTTTCAATTTCTTATTTTCATTAAAAAATTCAAAATCAAAATTGTTATTTATTTTTCTTGTGTGTTTGAATAACTAAATACACTGGTAAC ACATATGTCATAAT
• Tissue: pods
• Gene name: LI_gene_174732;
• Additional information: details;

Expression of Ll_transcript_280297

FPKM

• PAB: 0.2
• PNAB: 0
• PS1: 0.2
• PS2: 0.1
• PS3: 0.2
• PW1: 0
• PW2: 0.3
• PW3: 0.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_280297

• Blastp: 50S ribosomal protein L1, chloroplastic from Arabidopsis with 78.75% of identity
• Blastx: 50S ribosomal protein L1, chloroplastic from Pisum with 80.77% of identity
• Eggnog: Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (By similarity)(COG0081)
• Kegg: Link to kegg annotations (AT3G63490)
• CantataDB: Link to cantataDB annotations (CNT0002393)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019454375.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;