Id Trinity | TRINITY_DN50293_c0_g2_i2 |
---|---|
Name Transcript | Ll_transcript_498346 |
Sequence | CTCACTTCCTCCTCATTTCCTCAACTCTTCTATATATACTATCTCTTCTTCCATTATAAATTCACCAAACTCCCAGAAATGCTTACTTTAACCTGCATCA CTGCAGATTAGTTTCTTGGGTTTTTCACTGAGAATTGAAATCCTCTTCAAACAGGAATCTCAAGAAGGAAACATGTTTAATGAATTTGAAATGGATGAGA GGCCGATGCTGTCAGAAACACATGGACAACCATCTGATGCACCAGAAGATTCTAAATTCCAGAGGGTTGTATACAGGACACGGAGTGCATCAATGCCTAA TACTATAGTCTGCATGGAGCAACATGAGAGAGAAACTAGTCTTCTGGGACATACTGGTCCACCATGGAGTGAGAGAAAAACCGATTTTGTGCAAATGAGT GCTCCACTATGTCATACCCGTGGAACCCAAAATCTTTTGCCCCAGAGTACAATAGTGACACTAAATAAAGAAGCAAATAACAACAGTGAAAATAAAAATG AACACTTATTGAAGTCCGGGCGGTTGGGAGTGTGTAATGATCCTTATTGTACTACTTGCCCTATGCTTGATCCTCTCTTCCTAGAATAGGCTATACTATT TCTCTTTTTATTTTAAGAAAACATTAATATGATTTTGAAGATAACTTTAATTAAGTAGTGCATGGTCAAATATTTTATTATAGATATATGTTGTTTTATA CTATTCTAACGTGGTTCTTAAGTAGCCTAATTTTTTTCAAGTTTATCAATTCTTGTACCATAGACTTTTTCATTTATATAGTTGAGGCTTTTTTGCGCTT CTACATCATAGTAATTAATGATATTAATACATTTATGTTAGCCATCAAGATTTTGAACATTTGATAAGAAGAAATTTGTTTCAATTGCTATTCACTTCAA TTATATTCATGAGAAGAAATTGGAGTTTAGTGTCCTAAAGCCTGATTTAGCCCAAGCATACTTGTATTCATAACTTGACTATTTATACAGTTCGACAATC CTCTTTCTGGAGATGCCAAGGGTTTTGGGAGAAAATTTTATTCCTTTAGCTCCATGCATGTTCGTGGAATCATGAACCCTCATGCGAAAGTTGTACAACA ATGGAACAAAGTTCTGGGTATTTTTTGCTTGTTGGCGATTTTTCTAGATCCATTATTTGTCTTCTTATTGCATGTGCAGGAGGTACAATTATTTTCCTTT TATTTGATTGAAAAATCTTGCCAGATCTACATAATAATATTTCTCTGCTATTATTTTTTGTATATTTACCATGTTTTTCTCGTTCTTTGAATGCAGGAAA ACAAATGTATTGTTATCAACTGGACAATGACACAAATATTTGTTGTGCTGAGAAGCATAAATGATTTGATATATTTAATGAACATTCTTCTCCAGATAAT TATGTTGTTTGTGATACCATATTACGTGGGTTCATCGGGAGCAAATTATGCCAAGAATATTTTGCGTGTATCAATCCTGGTGCAGTATATTCCCAGATTA TTCAGGTTTCTGCCTCTACTATTTGGCCAGTCACAAACGGGATTTATATTTGAGTCTGCCTGGGCAAATTTCATCATAAATCTTCTCACTTTTATGCTAT CTGGCCATATCGTTGGTTCTTGTTGGTATCTCTTTGGTCTTCAGGTGTGTAAAACTAACATTTGAAGTATATTTTCCCAAAAATACTGAGGTTTTTCCTA ACTAAATTTCATAGTTTGCCTAAAATTATGGGCTTGCGTGGAATAGAAGGACATGCAACTTGCACAGAACAAAAGAAAAATTCAATTCATCAAAAGATGA TAAACATTTAATTTTTTACTTTCTCCTTTTCTCTCTTTTCCTTCTTTCAGCGTGTCAATCAATGTTTACGAGATGCCTGCCATAAAGCAAATATTCCCCA GTGCATGGAAATTATTGATTGTAAACAAGCCCCTCACGTGAATAACACAACAACCTTAGTTGAATGGCACAACAATACAGATGCCATTAGTTGTTTGGAT TCATCACATACCGATGGCTTTCATTATGGGATCTATACCAATGCTGTACAAGTTACTATAGAAACTAGTGTTATCAACAAATATGTGTATTCTTTGTTTT GGGGATTCCAGGTATGTATTTCTTTTTTTTCTTTTTTGTTCCTTCATTAGTAATAATATCCAAACAAATCTCATTGATCCTTCCTATGAAAAAATTATTA ATATTATTTAATTTACAACAAATCCTCCTATCATTGATCCTCATGGTTGATCTATCCTTCGGGGATGATTTATTGAAAAAGTACATATTCTCTTTATGTT GTATTATCGAATCATAATTTAACTAGAAGAATGGGATCACAAGGCTTGAGTTTCTCAGAACACTTTTTTTTTTTAAGCAATGGTGCAAGCACCCGAATTT ATTAAGGAAGAAGACAATAGAGAACAACCCTAGCCATTTTTAAACCTATAGCTAGGAAGAGAAGAAGCATTTCTATTACATTCATTAACAAGAAAAGAAG GAATAGAATGCCAAATAAAATTGGTTCTAGACTTTAAACCATGATTTGCAAGAAGATCAGCACATTGGTTTCCTTCACGAAAAATATGGGAGATTTTCAA GTTTATAGAAGCCATGTTAGCCTTGCAAATAGACCAAAGAGGAAGAAGCTGCCACGGAGGAGGGGAAGTAGCCATGAAGATGTCAACAACCATAGTAGAA TCACACTCAATCCAAAGATTGCGCCAATTTCTAGAAGTAGCCATTGAGACAGCCTGCATGGCTCCATGCAACTCGGCATAAATGGCAGTTTTACCCACAC TACTCTAACCAAAGTTGTCAAGGCCAAGTAGCCATTCAGAACACTTGGTCATTGATGGTGTGATCATGTCAAGGCCCAAGTTTTACCCACACTAACCAAA GTTGTAAAGTCAATGCACATGAATGGTTTAGTATCCCTTAACTACTCTACCTGTGTGGTCTTTAATACAGCAAATCAGTACTCTGGCTGGCAATCTAACC CCGAGCAATTTTGTGTGGGAAGTCCTTTTTACAATGGCCATCATCGGATCAGGGTTGTTGCTTTTTGCGCTACTCATTGGAAACATACAGAACTTTCTTC AAGCTCTAGGACGAAGGAGGCTAGAGATGCAACTTAGAGGTTGTGATGTTGAACAATGGATGCATCATTGCCGCTTACCAGAAGATCTAAAAAGCGAAGT GCGACAGGCTGAAAGGTATAGTTGGGCTGCAACAAGGGGGGTGAATGAAGAAATGCTTCTTGAGAATTTGCCAGAAGATCTCCAGAGAGACATAAGACAC CATCTCTTCACATTTGTTGCAGAAATCGGAATTTTTAGGTCGATGGATGAACTTATCTTAGATGCCATCTATGAGAGACTAAGACCAAAGACATACCTAA AAAAAGTACAATTTTGTGTCGGGGTGGTCCGATAGAGAATATTATCTTTATTGTGCGTGGAAAATTGGAAAGCATCCGAGAAAATGGAAATAGAGTTCAC TTATCAGAAGGAAATGCTTGCGGTGAAGAACTTCTGACTTGGTATCTTGAACATTCTTCAGTAAGCAAAGATGCTAAAAAAGTACAACTTTCGGGACCTG GATTGATTAGTGACAGGAATGTGAAGTGCTTAACAAATGTCCAAGCATTTTCACTTCGAGTTGCTGACCTTGAAGAAGTCACAATCCTTTTCAAAAGATT CTTGCAAAGTACAAGTGTCTAAGGAGCTTTAAGGTCATTCCTTTGCCTTGTTACATCTAGATTTAAGGTTCAGCATAGTCTTTTTTACCATTATGACTAA CTAAAATCCAAATCAACTCTAGAGTAGCATTTGGTGTGTGGAGATAACTAGATAGAATATGATGAATCGAGATATTATATTATCTTTGATTCCAACGTAG TTAAAATGATTTACTTTTTTGGTCTTTTATCCCGACTCGTTTATAAAATATACCAAACACACAACAAAAACTAATATGTTTTGTTATGTCTTGTTCTAAC ATATCCATCAAACACTAAGACATGAAAAATGTTATTTCATTATCATGTGTCCCATTTGTCTGTAGTAGCTTAGATTCCGATGCTTCATTTTCATTAAGAC TAGTTAGTCCTTAACTATCACACTTAAGAATACATGGAAATGAATGGTTCATATGTGACCCAACATCTTTGATTCAATTCCTTTTTTCACCTCTTTAAAA AAATGCCCAACTTATGTTTTAAAATTTGTTGCTCTAACATAATCATTTGATAATTGTATCATATTAGGTATGAATCACATTATAGGAG BLAST |
Tissue | pods |
Gene name | LI_gene_176095; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_498346
Blastp | - |
---|---|
Blastx | Putative cyclic nucleotide-gated ion channel 19 from Arabidopsis with 66.67% of identity |
Eggnog | - |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_015966820.1) |
Pfam | Reverse transcriptase-like (PF13456.5) |
Rfam | - |
GO | - |