| Id Trinity | TRINITY_DN50293_c0_g2_i7 |
|---|---|
| Name Transcript | Ll_transcript_498355 |
| Sequence | CTCACTTCCTCCTCATTTCCTCAACTCTTCTATATATACTATCTCTTCTTCCATTATAAATTCACCAAACTCCCAGAAATGCTTACTTTAACCTGCATCA CTGCAGATTAGTTTCTTGGGTTTTTCACTGAGAATTGAAATCCTCTTCAAACAGGAATCTCAAGAAGGAAACATGTTTAATGAATTTGAAATGGATGAGA GGCCGATGCTGTCAGAAACACATGGACAACCATCTGATGCACCAGAAGATTCTAAATTCCAGAGGGTTGTATACAGGACACGGAGTGCATCAATGCCTAA TACTATAGTCTGCATGGAGCAACATGAGAGAGAAACTAGTCTTCTGGGACATACTGGTCCACCATGGAGTGAGAGAAAAACCGATTTTGTGCAAATGAGT GCTCCACTATGTCATACCCGTGGAACCCAAAATCTTTTGCCCCAGAGTACAATAGTGACACTAAATAAAGAAGCAAATAACAACAGTGAAAATAAAAATG AACACTTATTGAAGTCCGGGCGGTTGGGAGTGTGTAATGATCCTTATTGTACTACTTGCCCTATGCTTGATCCTCTCTTCCTAGAATAGGCTATACTATT TCTCTTTTTATTTTAAGAAAACATTAATATGATTTTGAAGATAACTTTAATTAAGTAGTGCATGGTCAAATATTTTATTATAGATATATGTTGTTTTATA CTATTCTAACGTGGTTCTTAAGTAGCCTAATTTTTTTCAAGTTTATCAATTCTTGTACCATAGACTTTTTCATTTATATAGTTGAGGCTTTTTTGCGCTT CTACATCATAGTAATTAATGATATTAATACATTTATGTTAGCCATCAAGATTTTGAACATTTGATAAGAAGAAATTTGTTTCAATTGCTATTCACTTCAA TTATATTCATGAGAAGAAATTGGAGTTTAGTGTCCTAAAGCCTGATTTAGCCCAAGCATACTTGTATTCATAACTTGACTATTTATACAGTTCGACAATC CTCTTTCTGGAGATGCCAAGGGTTTTGGGAGAAAATTTTATTCCTTTAGCTCCATGCATGTTCGTGGAATCATGAACCCTCATGCGAAAGTTGTACAACA ATGGAACAAAGTTCTGGGTATTTTTTGCTTGTTGGCGATTTTTCTAGATCCATTATTTGTCTTCTTATTGCATGTGCAGGAGGAAAACAAATGTATTGTT ATCAACTGGACAATGACACAAATATTTGTTGTGCTGAGAAGCATAAATGATTTGATATATTTAATGAACATTCTTCTCCAGATAATTATGTTGTTTGTGA TACCATATTACGTGGGTTCATCGGGAGCAAATTATGCCAAGAATATTTTGCGTGTATCAATCCTGGTGCAGTATATTCCCAGATTATTCAGGTTTCTGCC TCTACTATTTGGCCAGTCACAAACGGGATTTATATTTGAGTCTGCCTGGGCAAATTTCATCATAAATCTTCTCACTTTTATGCTATCTGGCCATATCGTT GGTTCTTGTTGGTATCTCTTTGGTCTTCAGCGTGTCAATCAATGTTTACGAGATGCCTGCCATAAAGCAAATATTCCCCAGTGCATGGAAATTATTGATT GTAAACAAGCCCCTCACGTGAATAACACAACAACCTTAGTTGAATGGCACAACAATACAGATGCCATTAGTTGTTTGGATTCATCACATACCGATGGCTT TCATTATGGGATCTATACCAATGCTGTACAAGTTACTATAGAAACTAGTGTTATCAACAAATATGTGTATTCTTTGTTTTGGGGATTCCAGGTATGTATT TCTTTTTTTTCTTTTTTGTTCCTTCATTAGTAATAATATCCAAACAAATCTCATTGATCCTTCCTATGAAAAAATTATTAATATTATTTAATTTACAACA AATCCTCCTATCATTGATCCTCATGGTTGATCTATCCTTCGGGGATGATTTATTGAAAAAGTACATATTCTCTTTATGTTGTATTATCGAATCATAATTT AACTAGAAGAATGGGATCACAAGGCTTGAGTTTCTCAGAACACTTTTTTTTTTTAAGCAATGGTGCAAGCACCCGAATTTATTAAGGAAGAAGACAATAG AGAACAACCCTAGCCATTTTTAAACCTATAGCTAGGAAGAGAAGAAGCATTTCTATTACATTCATTAACAAGAAAAGAAGGAATAGAATGCCAAATAAAA TTGGTTCTAGACTTTAAACCATGATTTGCAAGAAGATCAGCACATTGGTTTCCTTCACGAAAAATATGGGAGATTTTCAAGTTTATAGAAGCCATGTTAG CCTTGCAAATAGACCAAAGAGGAAGAAGCTGCCACGGAGGAGGGGAAGTAGCCATGAAGATGTCAACAACCATAGTAGAATCACACTCAATCCAAAGATT GCGCCAATTTCTAGAAGTAGCCATTGAGACAGCCTGCATGGCTCCATGCAACTCGGCATAAATGGCAGTTTTACCCACACTACTCTAACCAAAGTTGTCA AGGCCAAGTAGCCATTCAGAACACTTGGTCATTGATGGTGTGATCATGTCAAGGCCCAAGTTTTACCCACACTAACCAAAGTTGTAAAGTCAATGCACAT GAATGGTTTAGTATCCCTTAACTACTCTACCTGTGTGGTCTTTAATACAGCAAATCAGTACTCTGGCTGGCAATCTAACCCCGAGCAATTTTGTGTGGGA AGTCCTTTTTACAATGGCCATCATCGGATCAGGGTTGTTGCTTTTTGCGCTACTCATTGGAAACATACAGAACTTTCTTCAAGCTCTAGGACGAAGGAGG CTAGAGATGCAACTTAGAGGTTGTGATGTTGAACAATGGATGCATCATTGCCGCTTACCAGAAGATCTAAAAAGCGAAGTGCGACAGGCTGAAAGGTATA GTTGGGCTGCAACAAGGGGGGTGAATGAAGAAATGCTTCTTGAGAATTTGCCAGAAGATCTCCAGAGAGACATAAGACACCATCTCTTCACATTTGTTGC AGAAGTATGTACTAGAATTTTTGTGGCATAAATTATTAGTTATAGTTACGCAATTTATCACGATGCACAAATTATTAGTTATAGTTTTTGTGGCATAATT TCATAGCTCTACTTGTAACATGTTAGAATTAAATAGAGTTAAATGTGGAAAACATTTAAAAGTCAAGGTTTTATGCTTCTTCATCATGAAACTAAAACTA TGATACTTCATAAGCCAGAGTGTATGAAACAACCCTGAAATTGTCTGCATAGTTTATTTGATTTTCTTTTATGGCTTTATATCAATTTGTATTAATACTT GAGGCTCTTAAATCATTAGCAGATCGGAATTTTTAGGTCGATGGATGAACTTATCTTAGATGCCATCTATGAGAGACTAAGACCAAAGACATACCTAAAA AAAGTACAATTTTGTGTCGGGGTGGTCCGATAGAGAATATTATCTTTATTGTGCGTGGAAAATTGGAAAGCATCCGAGAAAATGGAAATAGAGTTCACTT ATCAGAAGGAAATGCTTGCGGTGAAGAACTTCTGACTTGGTATCTTGAACATTCTTCAGTAAGCAAAGATGCTAAAAAAGTACAACTTTCGGGACCTGGA TTGATTAGTGACAGGAATGTGAAGTGCTTAACAAATGTCCAAGCATTTTCACTTCGAGTTGCTGACCTTGAAGAAGTCACAATCCTTTTCAAAAGATTCT TGCAAAGTACAAGTGTCTAAGGAGCTTTAAGGTCATTCCTTTGCCTTGTTACATCTAGATTTAAGGTTCAGCATAGTCTTTTTTACCATTATGACTAACT AAAATCCAAATCAACTCTAGAGTAGCATTTGGTGTGTGGAGATAACTAGATAGAATATGATGAATCGAGATATTATATTATCTTTGATTCCAACGTAGTT AAAATGATTTACTTTTTTGGTCTTTTATCCCGACTCGTTTATAAAATATACCAAACACACAACAAAAACTAATATGTTTTGTTATGTCTTGTTCTAACAT ATCCATCAAACACTAAGACATGAAAAATGTTATTTCATTATCATGTGTCCCATTTGTCTGTAGTAGCTTAGATTCCGATGCTTCATTTTCATTAAGACTA GTTAGTCCTTAACTATCACACTTAAGAATACATGGAAATGAATGGTTCATATGTGACCCAACATCTTTGATTCAATTCCTTTTTTCACCTCTTTAAAAAA ATGCCCAACTTATGTTTTAAAATTTGTTGCTCTAACATAATCATTTGATAATTGTATCATATTAGGTATGAATCACATTATAGGAGATCCCTTCCAACTA CCTGAGTTCAGGTTGCATGGAGCTATAGGAAGAAACGTCCAAGTCGTGTTAATACCTCACACTTAGATTAAACAATGAAGTCATAGGTTGTACTGTAATT TTGATTAGCTACACGTTGTCATAATTGTATTGTAATAATATTTGAGTTTGTGACATATATATGTCATTTTTTCTTTTAATAATACTAATATTTCAAGTTT AAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_176095; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_498355
| Blastp | - |
|---|---|
| Blastx | Probable cyclic nucleotide-gated ion channel 20, chloroplastic from Arabidopsis with 49.52% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_017439664.1) |
| Pfam | Reverse transcriptase-like (PF13456.5) |
| Rfam | - |
| GO | - |