Ll_transcript_488548

• Id Trinity: TRINITY_DN50306_c3_g2_i8
• Name Transcript: Ll_transcript_488548
• Sequence: ATTGAAAGTGACCCTAATTAAGCAAAGAGGGACCCTCTGAACCGCGTTAATCTCTCATCTAACGTTTTATATAAATATTTTGTTCTAGTTGTAGAGAGAG AAAATGAAAGACGCAAATTGCATTAAGAAATGGCCAGATCCTAACGCTTCTGATCAATAATCACAGTTATTTTGAGAAGATGAGTGAGGTAGCGAAAATA CTATACATGGTGGTGGTTGATGACGCTGAAAAGGGAAAGGAATCTTTTCGATATACACGTTCCGTTCTTCAGAGCACACTTCAACTTATGGGATGTAAAG CGCGTCATGCTTTCAAGATTAGGCAAAGAGTTTTTGAAATCACGCAGAGTGGGCGTTCTACTGAAGCATTGCAGCCTGAAGGTATGGTTGCGAAAAAGGA CATTCACGATGTTGCCGATCGCATGGGTAAAATAGACTTAGGCAACCATTTAATTTTAGGGAAAGATCTAGGAAATAAGAGTGTGCTATTTGAGTTATAT AAAAGACGCACAACGGTATTTGTTCCAAGAGAAACTTTTCTGGATATTGTTTGTGATGCTCTGGCTGAGTACAAGTATCTGGGTCCCAATCAGAGAGCAG ACTTGGTGCTAGCCTGCAGGATCCGAGAACGGAAGGAATCTGTGACGGTGCTGTTGTGTGGCACTAGTGGCTGTGGCAAATCCACATTGTCTGCATTGCT GGGTAGCCGATTGGGAATAACAACAGTGGTATCAACTGATTCTATTAGGCACATGATGAGAAGTTTTGTTAATGAGAAGGAAAATCCTTTGTTATGGGCC TCTACCTACCATGCAGGCGAGTGTTTGGATCCTGTTGCTGTTGCAGATGCAAAGGCCAGAAGGAAAGCAAAAAAACAGGCTGGTGTGTCACATTCACTTC CCAAGGATGAAGTAACTGAGGGTCATAATTATAGGAAATCTGATATACGGACAACAGAGGGTGGATCTGGTACTACTGAACTGCTTAATGCAAAACAAAT GGCTGTAGAAGGATTTAAGGCACAGAGTGAGATGGTGATTGACAGTCTTGATAGGCTAATAACTGCCTGGGAAGAACGAAAAGAGTCTGTTGTTGTTGAG GGTGTTCACTTGAGCCTGAACTTTGTTATGGGGCTTATGAAGAAACATCCTTCAATCATACCATTCATGGTATATATTACAAATGAGGACAAACACACAG AACGATTTGCTGTACGTGCGAAGTATATGACACTAGACCCAACTAAAAACAAATATGTAAAGTATATTCGAAACATAAGAACAATCCAGGATTATCTCTG TAAGCGTGCTGACAAGCATTTAGTTCCTAAAATAAACAATACAAATGTTGATAAGAGTGTAGCAGCCATCCATGCAACTGTCTTCAGCTGTCTTCGCAGG CGTGAAGTTGGGGAACACTTATATGATCCTGCTAGAAATACTGTAACAGTTGTATATGAGGAATATAGAAATCAATGTGCAGCTAATTCTTTGAGTTCGA AAGGAATGTTTCAATTGATTAGAAGAAAAGGTTCTTCAAGAAATCTGATGGCTCTTGTTAATAATGATGGGTCGGTGGCAAAGGCTTGGCCTGTTGATAG GAATGGAAAGCCTACATTGGGCAGCGGATTGGATAATGGAATTGGAAGTCCAATGTATGGTCCCTTACAGATTGGTAAATCTGAACCTGTAAATCTTCAG TTTGGTTATTACGGGATCAGTGCTTGGCCAAGTGATGGTGGCACTAGCCGTGCTGGAAGTGTCGACGAGTCTAGAGCCGATTTGACCGATACTGGTAGTA GATATCTATCCTCTTGCTGTAGCTCACCAAGGCTGTCAGATGGCCCTGCGAAGGAGGTAAGCCTAATCATTTTTTGTTAATTGTTTCTTTTCATTATGAA AATTGAAGGCTTGTTAATGTCATTGATGATTTCTTTTAAGCTCAGTGCCTGGCAGTTATGAAGAGATGGGTAAAAAATATGAAAACTTCTTCTGTCATTT GCTGATTTTTTTCACTTTTTGGGGGTATTTTTTAAAGGTCAAGGAAGACGTCTCAGTCCATGGTAGTGACGAAGAGCTTGATGATCATTTAGAAGAGCTG GGCAGCGATGAGGATTTCAGTGACGACGATGACAAACATGTTGATGACGAGGTAGGGTCAGTTGATGAGGAATCTACCAAGTCTGATGAAGAATACGATG ATCTTGCAATGCAAGATGTGCAGGAAAATGGGTATTGCTCAGAGGAAGAGTTTAAGAGTAAGCTTTCTGCAGTTGCTGAGGAACTACGATCTAAAATGCA TGAGAATATGTACAGTCAGAACCTTGATCGTTTCCTTAGAAGTAGAAGCCAGCCAATGGAAACACTGGTGCCAGAAACCCAGTTCTGTTATTCTCCTATG ATTGTAGAAAATAGTGAAAGGAAATTACCACCAGCTGGTAAAGCCAAGTTAAGAAAACGCTCTCTTAGCATTCCTGCCTTGGGAAGGCATAGTTCAGCAA TCAATGATCCCATTCTTTCTGGTGCTCCTCAAAGATAGCACACTGTGCTTTTAATCTTAAGTCTTAAACAACCAACCCTTTTTTCATTTTTTAGCCAATG TGAATAGTAAAGCTTCCAAAATTTTCACCCTTTTACTATAGTTGCTTTTCATGGTTCTAAAATGGAAACGTTCAAATATGCTGGATGAGTTAATGTTCTG CGACATTTTCTAATGATGTACATAGGATGGAATTGGCAGAATCGGACTTGTATGCTGCAAGATCCTGTACCCTTGTTCCTTGTTAAGGTTTTGTCTTAGA AATGTGAGTTCTTTTTTCATTTCATTTATTTTATTTTATACTCAGTATGTTACCTAGGGATGATGTTAGGGCTGGTTTTTGTATTCCTTGTTTTGGTCCA TTTTGTGGCTTTCTTACATGGATATAGCAAGTCCTGCCGAACTTTTCTTAATATCCTAATAAATCTTAGTCTAAATCTATTTTATTATTCAATTCTTTTT TCTAAAAAAGTTAATATTAGTTATCCCATTGATTTGGCAGACGCATGGTGTGGGAATTTTATCTCACTTTCATATATTAGGTGGCG
• Tissue: pods
• Gene name: LI_gene_176202;
• Additional information: details;

Expression of Ll_transcript_488548

FPKM

• PAB: 0.5
• PNAB: 0.2
• PS1: 0.3
• PS2: 0
• PS3: 0
• PW1: 0
• PW2: 0.4
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_488548

• Blastp: P-loop NTPase domain-containing protein LPA1 homolog 1 from Arabidopsis with 67.92% of identity
• Blastx: P-loop NTPase domain-containing protein LPA1 homolog 2 from Arabidopsis with 69.49% of identity
• Eggnog: 2-Phosphoglycerate kinase(COG2074)
• Kegg: Link to kegg annotations (AT5G60760)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019436286.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;