Ll_transcript_489178

• Id Trinity: TRINITY_DN50328_c1_g3_i1
• Name Transcript: Ll_transcript_489178
• Sequence: CAAATGCATGTTGTTAAGACATAAGTGTCTGTTGGATAATGAAATTGTAGGTGTTGTTGCATTGTGTAATTTCATCACATCATGCCATATAAAGTCCCCA AATATGGATCATCATCTAAGGCTAGGAAGGGCACACATCTGAACAGTGATCTCGATCACGAAGGCGATAATGGGAATGTCAACCATGCTACCTATACAGT GCACATTCCTCCAACCCCAGATAACCAGCCTATGGAGATTTCTCTGGAGAGGTCACCTTCAAGGAGAGTGGAGGACCGGTATGCATCTAGTTCTACATTT AATGGCGGTTTCAATCACGATACACAAGCGCATTTGAAGGAGAAGGTGACTGAAACTGATTACAGCCATCCTCAGATGAATGTTGCAAAAGGGTTATCTT GTTCAGTTCGTGGTTGTGATGGAAAGCTCTTCATTGATGAGGGAGGAATGGATATGCTTTATTGTGACTGTTATGACAAGATTTGTAGGGATTGTTATAC AGATGCTTTAAGGGATGGTGAGGGGATTTGCCCTCGGTGCAAAGAGCCTTTCAAGGATTTGGATACGCATTTGGCTGATATGGTCAACGACCAGGAGTTG CCCATGCCACCCGGTGCTGGGGTGTCCAAGCCAGAGAGGAGTCTGCCGCTGGTGAAATCTGGTCTGTTGGTGAAATCGGGGCCATTGGTGAAATCGGGGC TGTTGGTGAAATCGGGGCCGTTGGTGAAATCAGGGCCTTTGTCGAGGAACCAACGTAATGATCAAACTTTTTTTATGAACCAAACTAACGAATTTGATCA TGATCAATGGTTTTTTGAAGGTAAGGGGAGCTATGGATTTGGAAATGCCATGTGGCCAAAAGATTGTGACAATGATGGCAGTTCTGGTTCTGATTGGATG GCAGTTGATCCTAATGCCTTCCAGGAAAAGCAGTGGAGACCTTTGACCCAGAAAGTGAAAATTTCTGCTGCAATTCTGAGTCCATATCGGATCATAATAT TCATCCGGTTGGTGGTGCTTGCTCTTTTTCTAACATGGAGGGTCCGAAACCCCAATGATGATGCAAAATGGCTGTGGGGTATGTCTGTGGTTTGTGAAAT CTGGTTTGCCTTCTCTTGGCTGCTCGACCAGCTTCCTAAGCTATTCCCCATAAATCGTGCTGCTGATCTCGAAGTCTTAAAAGAGAAGTTTGAAACTCCT AGTCCCGTCAATCCTGCTGGCAAGTCTGATCTTCCAGGAGTAGACATTTTTGTGTCAACTGCAGATCCAGAAAAGGAACCCCCACTTGTTACTGCAAACA CTATTCTTTCTATTCTAGCTGTTGATTATCCTGTTGAGAAACTTTCATGCTATGTCTCGGATGATGGAGGCGCACTTCTAACTTTTGAGGCCATGGCAGA GGCTGCAAGTTTCGCCAATGTGTGGGTTCCTTTTTGTCGGAAGCATGACATTGAACCTAGGAACCCAGAATCTTATTTTAGTCTGAAGAGAGATCCCTAC AAGAACAAGGTACGTTCTGACTTCGTAAGGGATCGCAGGCAGGTAAAGCGAGAGTATGAAGAATTCAAGGTCCGGGTTAATGCCCTTCCTGATTCAATGC GGAGGCGTTCTGATGCTTATAATGCCAGAGAGGAGATCAAAGCTATTAAGCTTTGGAGGGAGAATGGAAACAACGAACCAATGGAGAATATGAAATTTCC TAAAGGTACTTGGATGACTGATGGTACACATTGGCCAGGAACTTGGACAACTAGTGCACCAGAGCATTCTAGGGGCGATCATACCAGTATCATACAGGTG ATGATAAAACCTCCGAGCGATGAACCATTGGCAGGCACAGCATCAAATTCAACCGACATGGATTTAACTGAAGTTGATGTTCGTCTTCCGATGCTTGTCT ATGTTTCTCGTGAAAAAAGACCTGGATATGATCACAACAAGAAGGCTGGAGCCATGAATGCCCTGGTTCGAGCCTCAGCCATCATGTCCAATGGGGCTTT CATACTTAACCTTGACTGTGATCATTACATATTTAACTCCGAGGCACTAAGGGAAGGCATGTGCTACATGATGGACAGCGGTGGGGAAAGGATCTGCTAC ATTCAATTCCCTCAAAGGTTTGAAGGAATTGATCCTTCTGACCGCTATGCCAATCGTAACACTGTCTTCTTTGATGTCAATATGCGGGCTCTCGATGGAC TTCAAGGTCCAGTATATGTTGGCACAGGATGCCTATTCCGAAGGACTGCACTGTATGGATTTGATCCACCAATGATTAAAGAAGAAACTGATTGCTTTGG TCGTAAGAAGAAATCCTCATCGGTTTCCTCTGTCCCCGAAGCTGTTGATGCTGAGGACCAGTCATTGAGAAATGACAGCACTGATGATGATGGTATGAAC ATTTCTCTTATTCCTAAGAGTTTTGGCAACTCAAGTCTCTTTATTGACTCAATCAGGTTAGCGGAGTTCCAAGGGCGTCCCCTTGCTGATCACCCATCTA TCAAATATGGACGACCTCCAGGTGCTCTAATTGGTCCCCGCGAACCTCTTGATGCCGCAACTCTTGCTGAGGCAATCAGTGTGATTTCATGCTGGTATGA AGATAAGACTGAATGGGGTGATAGAGTTGGATGGATTTATGGATCAGTAACTGAAGATGTCGTGACAGGTTATAGAATGCACAATAGAGGATGGAGGTCT ATATATTGTGTGACCAAGAGGGATGCCTTCCGCGGCAGTGCTCCAATCAATCTGACTGACCGGCTTCACCAGGTTCTTCGATGGGCTACTGGCTCGGTTG AAATATTCTTTTCACGTAACAATGCTCTTGTAGCTAGCTCCAGAATGATGTTCCTGCAGAGGGTTGCTTACCTTAATGTTGGAATTTACCCTTTCACTTC CATCTTTCTCATTGTCTACTGCTTCGTTCCTGCACTTTCCCTCTTCACTGGTCAGTTCATTGTCCAGACCGTTCAAATAACCTTCCTAGTATACCTCTTG GGCATCACCATCACCCTTGTCTTACTTGCCATTCTGGAGATCAAATGGTCCGGTATTGATCTTGAAGAGTGGTGGAGGAATGAGCAATTCTGGTTGATTG GAGGCACAAGTGCCCATCTTGCTGCTGTCCTGCAAGGTCTACTAAAGGTGATTGCTGGCATTGAGATTTCATTCACCCTGACATCAAAATCCGGGGGTGA TGATTTAAACGATGAATTCGCGGATCTTTATATCCTGAAATGGACCTCTCTCATGATACCACCACTGACAATCATGATGGTCAATGTGATAGCGATAACC GTAGCAGCTATCCGGACTATATACAGCAATAATTCTCATGGATGGAGCAGTTTACTTGGAGGTGTGTTCTTCAGTTTTTGGGTGTTGGCTCATCTGTATC CCTTTGCAAAGGGACTTATGGGTAGAAGGGGAAAGAGTCCTACTGTTGTGTATGTATGGGCTGGTCTAATATCAATCACTATCTCACTTCTTTGGGTTGC TATTAGTCCTCCATCTGGGAGCAGTGAAATTGGAGGCTCATTCCAATTCCCTTGATTTTGTGGACCTCACTTTTCAGGTAGCAATTGTAAGTAATTCTCA GAAGCTTTTTGGTTCATTATGATTTTTTAGCTACCATTCATTGTAGGCCAAGCTGTTGCCTACACAAAAGGAAATAACATTACATTCTTTCTCGGCGCCA TGGTAAGGTGTTACTTGCCTGGAGGTCATAGGTTCAAATCTTGGACTGATTTTTTAAACTTTATACCTCAATCTTTTTTTCCCTTCATTGATTCTTGTGA CATTAATCTTTTTAGGGGAGCAACTCTTATACCAAAAAGTCTCCTGATATAAATTTGGTTATATTATTTTGTTGTCTTTTAGGAAACTTTTCTCCTTTAA GTTTACTTATTTTTAAGATGATCTACTGTAGTAACTGAACTATACAATTGTGAGTTTGATAACATTTCC
• Tissue: pods
• Gene name: LI_gene_176425;
• Additional information: details;

Expression of Ll_transcript_489178

FPKM

• PAB: 0
• PNAB: 0.1
• PS1: 0.7
• PS2: 0.3
• PS3: 0.5
• PW1: 0
• PW2: 0.1
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_489178

• Blastp: Cellulose synthase-like protein D3 from Arabidopsis with 70.11% of identity
• Blastx: Cellulose synthase-like protein D2 from Arabidopsis with 70.1% of identity
• Eggnog: Glycosyl transferase, family 2(COG1215)
• Kegg: Link to kegg annotations (AT3G03050)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019422628.1)
• Pfam: RING/Ubox like zinc-binding domain (PF14570.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;