Ll_transcript_344457

• Id Trinity: TRINITY_DN50493_c0_g2_i14
• Name Transcript: Ll_transcript_344457
• Sequence: CAATAGTTGAAAATATACCCCTAAACTTTTGAGAAAATTGTAAGAGATATAACATTTCAATCCTAAAAGTTAAGTGGCATAATGGAAAACAAGTCAAGCT TATAAAAAAAAGCACTTTTTCCCTTGGAGGTGAAAATTTTCAGCTTCTATTGTTGTCTTGTGCATCTAGGCCTCAACCACTCAACTTTTTCACCTCAATT TTCCTATAACAGGTTAGTCTGAATGTGACAACTGTAATCTTTTGAGAGATTAGCGTGGTGCTGATAGGGCTTTCAACTCTTTACATTTTTTAATTGAGAT CAATCTGTTCTTGGAGCACTTAATTAAATGTCTTTTCTTTGTCCGTTTGCTTTGCCATAGCACTTTTTGAAATCTGGAATTTTGATGGATTGCAATAAAG AAGAGGCCTTAAGGGCCAGGGATATGGCTGAAAAGAAGATGGAAAGCAAGGATTTTGCGGGGGCTCGTAAAGTTGCCCTTAAAGCTAAGCAACTATATCC TGTTTTGGAGAATATCAGTCAAATTCTTATTGTTTGTGATGTACATTGCGCTGCCGAGAATAAATTGAATGGCAATGCAATGGACTGGTATAAAATTCTT CAAACTGAGTTGACAGCTAATGACACAACAATTAAGAAACAATACAGGAAGTTTGCTCTCCAACTTCATCCTGACAAAAACCAGTTTCCTGGTGCAGAAG CTGCATTTAAGCTGATTGGGGAAGCTCAAAGAGTGCTTTTGGATAGCTTAAGCCGATCTAGGTTTGATGACATGTATCGCAGGGTTACAATGACCAGGAA TGCTACACCATCTTATAATGTTCAGAATGTTCAGATGAATTTTAATTCTGCAGTGCAAAGAAGTGTCAGGCCGGTATTTACAAACTTGAATCCTCAGCAA CACCAACAGCCTAGACAGTCATCTCAGCAGGGTGGCCTTAATGGTGGCCGCCCTACGTTTTGGACTGCCTGCACTTTTTGCTCCTTTAGATTTGAGTATT ACAGGGAAGTTTTAAATAGATCTCTTCGTTGTCAGAATTGCAATAAGCCATTCATTGCGTATGATGTGGATATGCAAGGTACAACTCCAGCAACTAATTC AACCCCGCAAGCTTTTGGCCAGCAGAAATATGGTGTGAATCGAGGTACTTACAGTGCAGGTGTTGGATCTCAAGGTAATTTGAACACTAACAAGACCAAT GCACGGCCTTCTGCGAAAAAAGGCTCTACTATTGACACCTCTAGAAAGCAAAATGGAAAGAGAAGGAAGAAGCAGGGAGAAAAATCCAGTGAATCTTCTG ATTCTATAGACAGCACGGATTCTGAAGACGATATTTTTGCTGACAATGATAAATTTCCTGGTCTAGAAAAGTTTTCATCTAATAGAGAAGAGAACCCGCG TAGATCTACACGGCAAAAGCATCAGGTTTCGTACAATGAGAATGTGAGTGATGATGATGATGACGACTCATTAATACCTTCGAAAAGGAGCAAGTGGAGC AGCTCATCATCTGATGCTAATGAAAGTTGTCCACAGGCAGCTAAAGTCAATTACCAGTATGGTTCTGCTGGTGATACGAAAGATGATCTGAAAGAAGTCA AGTGTAAACGTTCTGAAGAGAGCTTAGTAAATGGAGATGTGGATATTAAAGAGACAAGGGGAAAAGAAGCAGTAAATGACTCAAAGACGGATAAAGCTTT GGAGAGCACTTCTTTTGTCTTTCCTGATCCCGAGTTCAATGACTTTGACAAGAAAGAAGGGTGCTTTGAGGTTGGGCAGATTTGGGCTATCTTTGACACA GCTGATGGCATGCCTAGATTCTATGCTATAATCAGAAGAGTTTTCTCTAACGGATTCAAGGTGCGGATAACATGGTTTGAAGCTGATCCAGACGAAGATG ATGAAATCCACTGGTTTAATGAGCAATTGCCAATTGCTTGTGGGAAATTTAAACTCGGTGCCACTGACACCACTAAAGATCATCTGATGTTCTCTCATTT GATTTGTTGTGAAAGGATTGGCCGCTCTACTTTTAAAGTGTATCCAAGAAAGGGAGAAACTTGGGCCCTTTTTAAAAATTGGGATATCAAATGGTACATG GATGCCAAATCTCATAAGCAGTATGATTATGAATTTGTTCAAATTTTGTCAGATTATGTTGAAGGCGAAGGCATAGTTGTTGCATACTTGGCCAAGTTGA AAGATTTTGTGAGTCTCTTCTCTCGAATTATGAAGGAAGGCAAACACTCAATTCAAATTCCATCAGCGGAGTTATTAAGATTCTCTCACAGGGTTCCTTC TTTTAAAATGACTGGTGAAGAAAGACTAGGTGTTCCTGTAGGATCTTATGAACTTGATCCTGCATCCTTGCCTCAGAATCTGGCAGAGATTGCTGTTCCT GAAGATGTGGAACTGGAGGCCGGTCATAATCCGTCAGTTGGGATGAGTACAAAACCTGAGAGATGCATCTAGTTCCAAGGTTGAGATTGTGATGGGACTT GAGGAGGAATTTGGTATTACTGTTGAAGAAGAAAGTGCTCAGACTATCACCACAGTTCAAGAAGCTGCTGATTTGATTGATAAGCTTCTTGAAAACAAGT AATAAAATAGCACACACTGATTTGGACCTTTTTGTTATATCTTCATGGAAGAGGGTTTTTTTTAATTATATCTTTGGTATTTTAGTTTGATTGTTCCTCA AGTAAC
• Tissue: pods
• Gene name: LI_gene_177598;
• Additional information: details;

Expression of Ll_transcript_344457

FPKM

• PAB: 3.4
• PNAB: 6.6
• PS1: 4.9
• PS2: 5.2
• PS3: 6.3
• PW1: 6.5
• PW2: 6
• PW3: 5.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_344457

• Blastp: Chaperone protein dnaJ 49 from Arabidopsis with 31.29% of identity
• Blastx: Acyl carrier protein 4, chloroplastic from Cuphea with 82.5% of identity
• Eggnog: ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins (By similarity)(COG0484)
• Kegg: Link to kegg annotations (AT5G49060)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425595.1)
• Pfam: DnaJ domain (PF00226.30)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;