Ll_transcript_404890

• Id Trinity: TRINITY_DN50519_c0_g1_i3
• Name Transcript: Ll_transcript_404890
• Sequence: AAGTTTGTTCCATAATCAACAATTAAAGACTTCAACACTTCAACATCTCTCTAAACACTTCAACACTTCAAAATCACTGTGAACACTTTAAAATCTCTCT ACTTTCCTCACACACTTTCTCTATTTAGTTTCTCTCTCTTAATATGCCTGTTATCACAGAAGCAACAACAAAAGTAGTGGCAGAAAACATGAAATGGAGA AAACCCAGAAACCAAATCAACATTACAGAAACAGATCCAAACCCACAAAACCCTTCACTAACCCAAATCACAACTTGCAAATCCACCATTTCCTCTCTCT TACTCTCAACTTTCTCCAACACCAACAACAATGAAAACACCAGCAACAGAAACCACCACCATAGCAAGAAAAAAACAAACTTTTCTGCTGCAGCAACCTT CAGGGGCTTGGGCTGCACCGCCGGAGCACCGCAAGAGGTGTCGGTGCCGGCTATGATCCGAAGCTCAGCTGATTGGGAAGTGAATAACAAGAAAGGAAGA AAAAAGAAGCACAAGAGTACCAAGAACAGTAACAATGTTATTATTCCAGAAGGTTCTAATTCTAATAATAATAATAATCTTAGCTATGTGGATTTTCAAG ATGTTTGGTGTGGCCCTGGAATTGGGTTTTCAACTGATGCAGCATCTGTTGATTATGTTGTTCCAAAGAAGAATGTGTCTTCAAGAGGGAAAATTGATGT TGAGAAGATAACTCACAGAGAGTGTTCATCTTATTTGGGAAGGCGTCCTGTCACTCCAGAAACCATCTCGTTTCTGGACACTGATCCAGACATTTTCGCA GCTTCGGATTCCTTTGGACCCGCGGCTCCAATCTATCGCCATATTCAAGATCCTTCATCTGATGATTCATCTGATGGTTTTACTGAGATTTTGCTTCAAG GTGGTCTACTAATGGGGGGACGATTAACTAGGCACGACCGGTTCCGACGCTTGAGACTTGATATTGATAACATGTCATATGAGCAATTGCTTGATCTCGG TGAAAGAATCGGTTATGTGAACGCTGGACTTAAAGAAGATGAGATGGGACGCAACATAAGGAAGACTAAGTTTAAATTTTCACACGATGCATCAAAGAAT CAAGTAGATAGAAAGTGCACCATTTGTCAGGAAGAGTATGAAGCAGATGATGAACTGGGGAAGCTGAATTGCAAACATAGCTATCATGTTCGGTGTATAA AACAATGGGTTGCGCAGAAAAATTTCTGTCCAGTTTGCAAGCAACAAGTCATGGCTCGACACTGAGTGTCACAATCCTGATGTGTTTTTTGGGACTACTT ATTCTCATCCTTACGTTGGTGCATAGATTTTCAGATAAAATACAAGTTTAAGATTTTTTCGGTTTTTGCTATGTTTTTCTCAGCCTCCTTTGCTAGGAAT CTGGAACACATGTTATTGGGTAAAGGTTTCATAATTGGATGAGAACTTGGCATATTATAAACATGAGTTGGCCTTGCCTTTGAGCAAGTAATCATTTTTA TGTAGTTTGTGGTAGTGTTTATATTTCTGATGCTTATCATCTGCCCCCATTTCGTGTTTATGCTAATTGTCTGTGTTGCAAAAACTCAGCTTGAGCATTA AGAACACCCCATTAAGGAGCAAGGTCCATACCCGATCTCAAAGATGAGGTTCTCACCTCATGATGCATGGGGATGAGAGTACATCTGCTGTCCTACATGT TGTGCCATGTTGTGCCACTGGATGTACCACGAGTCCATGATTGGTTGAAAAATATATTTTAAACTAAAAAATTAATAATTAATTATGTTTCTGACCAATT ACAGTTTATGGCACATGCAGTGGTACAACTTGT
• Tissue: pods
• Gene name: LI_gene_177782;
• Additional information: details;

Expression of Ll_transcript_404890

FPKM

• PAB: 2.9
• PNAB: 26.9
• PS1: 34.2
• PS2: 15.3
• PS3: 19
• PW1: 15
• PW2: 16.1
• PW3: 12.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_404890

• Blastp: E3 ubiquitin-protein ligase MBR2 from Arabidopsis with 43.65% of identity
• Blastx: E3 ubiquitin-protein ligase MBR1 from Arabidopsis with 48.45% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (AT4G34040)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019421951.1)
• Pfam: RING-H2 zinc finger domain (PF12678.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;