Ll_transcript_402313

• Id Trinity: TRINITY_DN50568_c4_g4_i4
• Name Transcript: Ll_transcript_402313
• Sequence: GGCAGAACTGTGGTTTAATTGTTCATAAAATTCGTCCATTAATATGTGTCCTTTTAAGGCATTGTATGGACGAGACCCTCCGTCAATTATTCCCTTCCGC AGCGAGAGCACTGTTGTGGCAGCAATAGACGCATTGTTAACCAAAAGGGACAACATTCTACACGAACTCAAAACTCATTTGGCAAAAGCCCAACAAAGAA TGCGTGATTACGTGGACAAAAAAAGGAGAGAGGTAGAGTTTCAGGTGGGAGATATGGTCTATTTGAAAGCACAGCCATACAAGATTCAGTCATTAACTCC AAAGGTAAATGAGAAACTCAGTCCTCGTTTTTATGGCCCATTTCCTATTGTTGAAAGAGTTGGAGTCGTGGCTTATAGGTTGCAGCTCCCGGATTACTCG CGAGTGCATCCTGTTTTTCATGTCTCACAACTAAAATATGCATTGCCTGCTAGTATCCCTTGTGAACAGTTACCAGAAAAGGTGTTATCCAGTCGAAAGT TACTGAATGGGCAGATGCAAGTCTTGATTAAGTGGGCTGATCTCCCAAATCATGATAGCACTTGGGAAGATTTTATATTAGTCAATGAAACTTTTCCTGA TTTTCACCTTGAGGATAAGGTGTTGCTCGTTGGGGCGGGTATTGATAAGCCTCCAATTACGAGGGTATTTCAGAGAAGAAAGAAAGGTGACCAGGGTACT TTAGGAAAGAGAGGAAATGAGCATGTTGCACATGACTCTAACCAACAAGATACTTGGCAAGATATGAATGGGTAGAAGATCATGGAATCAAGGAAGAGAG GGTAATATGAGGAGAAGGAATAGCATAGTGTCAGGGGGAATCATTTAGGGAATTGTGGGGTGACTCTTGTCACAGGGTAGAGAGAAATTATTCCTTTGGT CGTTCTATTGCACTTTCTGCATTCTTAACAGCTTTCTTATTTTCTTATTATACTCTTGCAATCATCCATGATAGCAATGTACAATTTCTGCACTGTTTAA TACACAATTCTGCACTGGTTTATTTCTATTGTTGTTCTATTTTCTTTCTTAAATTGTTGGTATCTATCAAGTTGGTATCAGAGCTCCCGATCTTGGGAGC ATCTGGATGGTATCAACACGAATGGAGAATAGGCTGGAAAATGTGGAGAAAAGGTTGGAGGGAATACAATCTTCTCTTCAAGAAACTTTAAGGCAACAAA TGGAGATGCTGATGAAAACGGTGACAGATCGTTTGGAGGAGACGGTAGGAGAAATAAGGGGACTAGGTAGAGAAGAAGCAGGGGAAAACAGTAATCGTGA TGGGAGGCAATGGAGGGGTGGGGTATACGACAACGAAGAGAACCGAAGAGAGGAGAGGGTGAAGAGAGTAGAAGTACCATATTTCACTGGAGAAGATCCC CATGGATGGGTTTATAGAGTGGAACGCTATTTCGAAATCAATCGCATTCCAGAGGAGGAGAAGGTAGACACTGCGGTGGTATGTTTGGAAGGGAAGGCTT TAAATTGGTATTAGTGGTGGGAATCCCGCATGATGGTAGCAGTGCAATGGCCATTATTCCGTCAAGCTTTGATGAGTAGATTTCAGGTGTCCTCGTCGGA GAATCCCTATGAAGCGTTGATGGGGTTGAAGCAAAGAGGAACAATCATGGAGATTTACATGAGTTAATGGAGGTGGCACAAAAGGTAGAAGAAAGGAATC GGATCTTGGGGCGGTCATTGGGGTATTCAACCCGAGGAAGTGGAACCGGGTTCAATAAAATTGCCCTATCTGGACGCTGGACCGGGTCAAATGATTTTAA AAATTCATCTCATGAGGCACAATCACATGTGGGCCAAAAAGAAAACTCATGAGCCCAATGGGGACAAAATGAAAACACAGACACAAAGGGAGGAGTGGGT GCACGTGAAAGAGAAAATTTTAGCAACCATAAAAGGGGAGTAGGGTTCAAAAAAATAAGAAAGGAAGAAGAAAATGGGAAGAGAAGAAGAAATCTATGTT TCCGTTGTGACGAAAGTTATTTCCCAGGTCATATCTGCAGCAACAAACATCTTCATATAATCCTACTTGCACATGGTGAAGAGAAAGAAGAAGAAGAAGA AGAAGGTGAACAAGGGGAGGAAATAGTAGATGAGTTGAATATGCAGCTGAACGTTAGTAGCATTGCTGGAATGACTTCAAAAAATTCACTCGAGCTATGG GGGACAATCAAGGGACGCAAGGTTATAGTAATGGTTGATTCCGGAGCATCCCACAACTTCCTATCACCCGGAATAGTTGAAGAATTGAAGATTGCCACTG AGAAGACGTCGGGTTACTTCGTGGAAGTGGGAAATGGACAGCGCCTAGGGAGTCAAGGGGTCTGTCGAGAGGTTGAACTTCAACTCCCTACACTGAAGAT TATCCAGGACTTCTATCTGTTTGATTTGGTTGGTGTAGACGTCATTTTGGGATATGAATGGTTGAAGAGTCTCGGTAAATTCAGCGCAGATTTGGGGCGT TATTTGCTAGAGATTCAGGATAATGGGAGGACCATTGAAATTAGGGGAGACCCAACTTTATCCAGAACAGTGGCCTCTGTAAAAGCCATAATGAAGGAGA TGCGAAACGAAACAGAAGCTTATTATGTGGAGTTTGGAATGATGAGTATGATGTGTTCATCGGAGCTTATTATTCCGGGTAGTGTGCAGCATCTTATCCA GGAATTTGGTGATATTTTTCATGAACCAACAGGATTGCCACCTCAAAGACCGTGTGATCATGCCATTATACTGAAGGATGGGGCAGAAATTCCACACATA CGACCATATAGGCATCCTCATAGTTACAAGGAAGAAATTGAGAAATTTGTGAGGGAGATGTTAGCAGCAGGTATGATTCGGCCCAGTGTAAGTCCTTTCT CAAGCCCTTTGATCTTAGTAAAGAAGAAGGATGGAGGATGGCGGTTCTGTGTTGACTATAGAGCTCTCAATAAGGTCACTGTTCCCAACAAGTTTCCGAT CCCCATAATTGAGGAGTTGTTGGATGAGATGGGCGAAGCTTCATTTTCTCTAAATTGGATCTGAAATCCGGTTACTACTAGATTCGTATGAAGGAGGAAG ACATTCCCAAAACCGCTTTTTGCACCCATGAAGGTCATTATGAGTATGTGGTGATGCCTTTTGGGCTCACCAATGCTCCCTCAACTTTTCAAGCGCTCAT GAATGATGTTTTCAGGCCATATTTGAGGAAGTTTGTGTTAGTCTTCTTCGATGATATCTTGGTTTACAGTAACAACATTGTATCGCATTGTGATCATTTG CGGAAGGTGTTCGAAACGCTAAAGGAGCACAAGTTGTGGGTGAACTACAAGAAGTGCTGTTTTGGGGCTATCCAATTAGAATATTTGGGACATCTCATTT CTGGAAAGGGAATTGAAGCTGATCCGGAAAAAATTGCAGCAATGAAACAGTGGCCAATACCTAGAGATATTCGTGGGTTGAGAGGGTTCTTGGGTCTCAC GGGGTATTATCGCCGGTTTGTCAAAGCTTATGGGATTATGGCTAAACCTTTGACACAACTCTTGAAGAAGAACAACTTCAAGTGGTCAACAGAAGCTCAA TGTGCATTTGAAGAACTTAAGGCTGCCATGGAAAAATTACCCACGTTAGCTCTACCCAATTTTAATGTGCCATTTGAGGTTGAGACAGATGCGTCCGGAT TTGGCATTGGTGTTGTCCTTATGCAACAAGGCAGGCCGTTGGCATTTGTGAGTCAAGCTTTGTCCGAGAGAGCAAGGATGAAATCGGTCTATGAACGTGA ATTGATGGCTATTGTGTTTGCGGTGCAAAAGTGGCGACAATACTTGTTGGGTCACCACTTTATTATCCGGACCGACCAAAAGAGTCTTAAGTTCTTATTG GATCAACTCGTGTTGGCGGGGGACCAACTAAAATGGGTTACCAAGTTGATGGGTTTTAATTTTGAAATCCAATACAAGCCTGGGTCAGAAAATAGAGTGG CGGATGCATTGTCACGTGTTATGGAGTACAAATTAATTTCTATGGTCACCAATATTGATCTGGTTGAATTAGTGGATGAGGTTCTAGCTGATGATAAGTT GCTGCGGATTTTGCAAGAGGTTGTCCAGGACCCAAATTCTCATCCAATGTACACTGTCTCTAAAGGCTGTTTGTGGTACAAAGGAAGACTGGTTTTGCCT AGCACCTCAACACGCATTCCAGTGTTGCTAGAGGAGTTTCATTCATCGCCTTGGGGAGGGCATTCAGGGGTAGTTCGTACTTATAAACGGATAGCCATGG CATTTCATTGGAAGGGAATGAGACGTGACATAGAAAAATTTGTAACTGGTTATGACATTTGTCAACATAATAAGTATCAAGCGTTGAAACCGGCAGGATT AATCTAACCTCTTCCAATCCCCAACCATGTGTGGGAAGATGTTTCTATGGATTTCATTGGAGGGTTACCTAAGGCAAAAGGGGCGGACACAATAATGGTG GTGGTAGATCGATTGAGTAAGTTTGCACACTTTATTCCTTTGCAACATCCTTACACAGCTAAAGACGTGGCTCAAGCTTTTATTAAGGATATCATTCGCT TGCATGGTTTCCCTAGTTCTATTGTTTCGGATCGTGACCGTGTTTTTATCAGTTTATTTTGGAAGGAGTTATTTCGCTTGGCAGGGACCAAACTGCGTTT TAGTTCCGCCTACCATCCTCAAACTGATGGTCAAACAGAAGTGGCTAATCGGACACTAGAGACATACTTAAGGTGTTTTGTTAATGAACATCCAAAACAA TGGCTAAGGTGGCTGTCTTGGGCAGAACTGTGGTTTAATTGTTCATAAAATTCGTCCATTAATATGTGTCCTTTTAAGGCATTGTATGGACGAGACCCTC CGTCAATTATTCCCTTCCGCAGCGAGAGCACTGTTGTGGCAGCAATAGACGCATTGTTAACCAAAAGGGACAACATTCTACACGAACTCAAAACTCATTT GGCAAAAGCCCAACAAAGAATGCGTGATTACGTGGACAAAAAAAGGAGAGAGGTAGAGTTTCAGGTGGGAGATATGGTCTATTTGAAAGCACAGCCATAC AAGATTCAGTCATTAACTCCAAAGGTAAATGAGAAACTCAGTCCTCGTTTTTATGGCCCATTTCCTATTGTTGAAAGAGTTGGAGTCGTGGCTTATAGGT TGCAGCTCCCGGATTACTCGCGAGTGCATCCTGTTTTTCATGTCTCACAACTAAAATATGCATTGCCTGCTAGTATCCCTTGTGAACAGTTACCAGAAAA GGTGTTATCCAGTCGAAAGTTACTGAATGGGCAGATGCAAGTCTTGATTAAGTGGGCTGATCTCCCAAATCATGATAGCACTTGGGAAGATTTTATATTA GTCAATGAAACTTTTCCTGATTTTCACCTTGA
• Tissue: pods
• Gene name: LI_gene_178223;
• Additional information: details;

Expression of Ll_transcript_402313

FPKM

• PAB: 0.1
• PNAB: 0.4
• PS1: 0.5
• PS2: 0.4
• PS3: 0.8
• PW1: 0.3
• PW2: 0.6
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_402313

• Blastp: Retrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 44.59% of identity
• Blastx: Transposon Tf2-9 polyprotein from Schizosaccharomyces with 33.16% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_015964281.2)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078.26)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;