| Id Trinity | TRINITY_DN50572_c4_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_403986 |
| Sequence | ATTTGGAACACAAATTGATTAAAGTTGAAACACAATTTTCTCTCTCTCTAGACACCACATTTTAATTTTCCCCAATCCTCCCTCCTTAGATCCACTCCAA CAACAACAACAACAACGCTCTTTCAGCTTTTTTGTGATAGCAGTTCCAAGGATCTGTTCAAAAAACATGGCTACGGTTGATCAACCTCTGTATCCGATAG CGGTTCTGATCGATGAGCTGAAGAATGAGGACATTCAGCTTCGCCTCAACTCGATCCGAAGGCTTTCCACCATTGCGCGTGCGCTCGGCGAAGAAAGAAC CAGGAAGGAGCTGATTCCTTTTCTCGGCGAGAGCAACGACGACGAGGATGAAGTTCTTCTTGTAATGGCAGAGGAATTAGGTGTGTTTGTTCCTCATGTT GGTGGTGTTGAGCATGCCAGTGTGTTGCTGCCACCATTGGAAACTCTATGCGCTGTTGAGGAAACTTGTGTTAGGGATAAATCTGTTGAGTCTCTGTGTA AAATTGGTGCTCAGATGAGGGAACAGGATCTGGTTGAACACTTTATTCCTTTAGTCAAGAGGCTAGCTGCTGGTGAGTGGTTCACAGCACGGGTTTCTGC ATGTGGCTTGTTCCATATTGCTTACCCTAGTGCTTCAGAGGTGATAAAAACTGAATTAAGAACAATATATAGTCAGCTGTGTCAAGATGATATGCCAATG GTTAGGAGATCTGCTGCAACAAACCTGGGAAAGTTTGCTGCTACTGTCGAAGCTGTTCACCGGAAAACCGACATCATGTCTTTATTTGAGGAACTCACAC AGGATGATCAAGATTCTGTTCGTCTACTTGCTGTTGAGGGCTGTGCAGCTCTTGGAAAATTGTTGGAGCCCCAAGATTGCGTGGCACATATTCTTCCTGT CATAGTCAATTTCTCTCAGGATAAGTCATGGCGTGTTCGTTATATGGTTGCAAATCAACTATATGAGCTATGTGAAGCTGTTGGTCCTGACCCTACCAGG TCAGAATTGCTTCCTGCATATGTTCGCCTACTGCGTGATAATGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTGACTAAGTTTTCCCACATATTAA GTCCTGAACTTGCTATTCAGCATATTCTACCCTGTGTGAAGGAGTTATCGGCAGATTCATCTCAACATGTTCGCTCTGCATTGGCTTCAGTTATAATGGG AATGGCACCAGTGCTAGGGAAGGTATAAATCTCTATCTAAGCACATAAGTTCTACCAACATAAAATTAACACATTGAAAAATGTCTCAAGGCAAATGTAT GTGGAGGTAAAAAGTGTATGGTTTGGGTTATTTTATATAGAATACAAGAAGTCTTCCCAAGTGTGGTGATAAAGTTGAAATATGTGGGATTGTTAACTAT ATTCTACTATGGTTACTTTCTAGTGGCAGATATTTGTTTGCAGGTGGTGCAAATGGCATCTCTAATCATAAAATATCAACTGGGCTAATGAAATCTTGCC CCACTACATTTTTTATACTGCTCTCATCAATAAGTTGTATAAAAAAATTGGTAATTGTCTCTACCAACTACTAAGTGCTTAGCCAATCACTGAACATGGA AACCTTTTCATCTCAGTGATCACACTCTATTTTTATAGCCCTATGTGTTTTCTCAGCATTGCCATTTTCCTGCTACCAAAACGAGCACACCCTAGTTTTT CTCGTAGTCAATGTTTATGTGCAATTCTGAGCAATCTTTTCTTCTATTCCTTTAACTCTTGGAACTGCTCCATTCTACTGTAAATCTTCCTAAAAAAGAA GAGGATCTCTGTGTCTTATTGCTTTTACTATATTTTTGTTGTGGTTACAGGATGCGACAATTGAGCAACTTCTCCCTATTTTCCTTTCTCTTTTGAAAGA TGAGTTTCCTGATGTCAGGCTAAACATTATCAGCAAGCTTGACCAAGTGAACCAGGTTATTGGTATTGATCTGTTATCCCAGTCTCTATTACCAGCTATT GTTGAGCTTGCTGAGGATCGTCACTGGAGAGTTCGACTTGCTATCATAGAATACATACCCTTATTAGCAAGTCAGCTGGGTGTTGGTTTTTTCGATGACA AGCTTGGAGCACTTTGCATGCAATGGCTAAAGGACAAGGTATACTCTATTCGTGATGCAGCTGCTAATAATGTAAAACGCTTGGCAGAAGAATTTGGACC AGATTGGGCAATGCAGCACATTATCCCTCAGGTTCTGGACATGATTAACGATCCACACTATCTGTATCGGATGACAATTCTACATGCAATTTCTCTTCTA GCTCCTGTTCTGGGCTCGGAGATCACTTCTTCAAAGCTTCTCCCTCTGGTCATTAATGCATCAAAAGATAGGGTACCCAACATCAAATTCAATGTAGCTA AAGTGTTGCAGTCTCTCATTCCAATTGTCGATGCGTCTGTGGTTGAGAACACCATTCGTCCCTGTCTGGTTGAGCTCGGTGAGGATGCAGATGTTGATGT TAGGTTTTATGCCTCTCAAGCACTGCAATCTTGTGACCTACTCAAGATGTCTAGCTAGATCAATCTGCATATGTGTTTAGTTATTTTTTGTTATAGTTTT TCCATTTTTTATGTAATTGGCTTCTACCCATCTTGCCAATTCCTTTATATCACATATCTTTGTTGAGATCCTGTTTTTCTTTAGTTCTATCTGATATCCT CACCACCAGCATTTTTTAGTCATGAAACGTTGTCCAGAAGTGGGACTGTGTTTTTTTTGTTTTGTTATAAACATTAGAATGTTAACATTTTGTATAAATC TTATGATTTACCGAATACTAAAGATCTTTTTGCGAGTTGAGTACTGGAGGGAAGAGAAAGTGAAGGTTTATGAGCCATGAAATATACTCGTGAGATGGTT CTAAAGTCTTCTATTTTGTCTTTTACTCCAAAACTCACCTTAAAAGTACCTTCAGGTCTCCTATTAGTATATTATCTCTAAATTTGCTTGAGCTTTAGCT GAACTTGATTGAATTATATCCTAACTAACCATAGCATTTTCTTATATGAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_178267; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_403986
| Blastp | Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform from Arabidopsis with 86.65% of identity |
|---|---|
| Blastx | Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform from Arabidopsis with 86.65% of identity |
| Eggnog | (Regulatory) subunit(ENOG410XQVI) |
| Kegg | Link to kegg annotations (AT3G25800) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019457862.1) |
| Pfam | Vacuolar 14 Fab1-binding region (PF12755.6) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |