Ll_transcript_378350

• Id Trinity: TRINITY_DN50787_c1_g1_i10
• Name Transcript: Ll_transcript_378350
• Sequence: TTGATAACTGCCAGATAGGGCAGTAGCAGGCACCCTATCAGTTTCAGCCTCTACCCCAATATTAGTTACTTAATATAAAAATAATCTATTATTATTAATT ACTATTACCAATAAATTTGTTAATACCAATAATATTATTATTTTTTGTGTGCAAAATAGCAGATATGATTCATGTTTTGTTGAAATACTGAAAAGGGGAA GATATGATTCATGTTTTTTTGGTTGATAACTGGAAATGAAGTTTTGCTCTCTCTTCTTCCAAAAATCATAACTTTTGCACACTCTCTTTTCAATTTGGAA TTTGAAGATTACCCTTTTTCTTCTCTCATTTTCCTCTTTCATTTTCATATTGTATTTGTTCTTTCATCCACCAACAACAACACCACCCTCTCTTTTTCTC ACTCATCTTTTCTCTTTCTCTCTTTGTTTTTATTCACTCAGGTTTTGAAAAACAACCTTGAATCCAATCAAAAAAGCATACATAACAGCATATTTGTGGT TCTTATTCTCTCACTTGTTGTTTCTTTGATTTTTTTTATTCTGATAGATCGGTTTTGTTTCATTACCGGCGTCTGCTAAACTCGGTGCATGCTCTGCAGC TTTATTCAGTAATATTTAATTCTATCGGGTTAGGAAACTTATAGATTCCCTCAATGCAAGAGCAGAGAAGTACAATTGGTTCCTTGCCTGAAACCATAGA ATTTGATTATGGATCTACATCGAGTAACACTACAGTTAATCCGCCAATTTGCTTGAATAATATGCAGAATCCTGCAGAAAATCGCATACCTGATTATTTA CTTTCCCCCGCCCCCAGTGAGATTAACCCATCTTATGTGAATTATGTAAACCGGGACTGGCAGAACATAAATGGATGGAGGAGCTCAGGTGAGCCAAGTT CCAATAATACACAAAAAGAGGTTAACAACAATGAGCAGAAAAGAGAACTGGGATGCTTATCTTCAGTAAGTGCTAATGCTATAGGTGGTCCAATACTAGA GAGGCGCTTTAGACCAGCCAATGCTCTTTCGCTGGAGAATGTCATTACAAGTTCTATGCCTATGCACAGCTCCAATTCACATTTGGTGTCCCAGAGTCTT AATTTAAATGCAAGCTTAGCAGATAACGGCAGTAATAATAGTCATCATGCGGAACATCCTAACTTGTCCAAGTCTAGTGGACCAATAAATGAGCATATTC CACCTATTACTAGTTCTGGTTCTTTTATGCTTCCTTCTGGATGTAATGGCTTTTTGATTGAGGATAGTGATGGTAGGCCAGGTTGTTCACAAGACACTCG CCGTGTATCTCGTAAAAGAAAGGCTGTTGAACGAGACTCTGGACAATCTTCAGATGTTGGAAGTTGTAGCTACAGCCAGAATAGAGATGGTAGTGCTTGG AGTACACTTCCTACTCAGAATTATGCCGGGAGCAGTTTTAGAAGAACTGCTTCAGCAGAACAGGTAAATGCAAGACTTGGCCTGAGTATGGGTAATGTTA CCTCTGAAAGTGTTCTGGATACAAATGTTGCAGGAAGATCAGAAAGCTTCCTCAGAAATTGTCGTTTGCGGATAAATCCCTCAAGCCAACAAAATTCCAT TCCTCCCGCTGCATTCCCAAGTGGGAGAGTGATTAGGAGTAATGGCGTTTCTTCGTCCACTTCAACATTGCAAAGGATTCATCCTGTTGATAATTCTCTA GACTTGAGGTCAGTACCACCAGTTGATACTACGATTCCTCAAAGCCAGCCCCTTCGAGTTCATGTTCCTGCTTTACCAAGGAATGCACAATCATTTAGGT GGAGTGTCGGATCTAGCTCAACAAACAACCATTCATCAAACTCGGTTATAAGTGCAACTAGGGATAATCTACCACAACAGGAAGCTAGCTCAAGAAGTAT GGCTAGAAACATTTTAGAACAATCGATATTTTTACCCCCAACCAATTTAAGAAATTTGGTTCGAAATCCCGCAATTAGAGCTTCGAGTAGTGCAAATTTA AGTATCCCGGGAAATGTTACTTCATCCCAGCCTGGGTCAAATTCCGCTATCAATCCACCATCTGTCTCACCATGGGTTTCTCAGCCTAATCCTCAACAGC ATTATCCACGCAGGTTAGCTGAATATGTTCAGCGGCCCATGTTTTCTCCTGGTTCCGAGGCTGCTGGAAATCCGATCAGCAATTATTCTTCCTTGCGTAG TCCAGCTATTTCATCTGGGTTGTCATCGGGGGTGGTACATCTGGGGTCCTCTTCAGTATTGGAGAGGCCAGGTGATAGTGAATATGCAATTGCTCCTTCA TTGCGATCATTGCCTGGTGCAGGAAGTGGTAGAATTGTATCTGAGCTCCGCGATGTGTTGGGCCGCATGCGTAGGGGTAGGAACCTACGGCTTGAGGATG TTATGATCCTCAACCAGTCATTGTTTCCTGGAATAGCTGATAATCATGATCGGCACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTT ATTGGCTTTGGAAGAACGCATTGGAAATGTATGTACTGGATTGAGTGAAGAAACCGTACTGAAACATTTGAAACAGAAGAAGTATTCAGTTGAAACAGGA TCTCAGCATGAGGCAGAACCCTGTTGCATTTGTCAGGAGGAGTATAAGGATGGAGACGATATGGGATCGCTGAATTGCGGGCATGACTTCCATATGGACT GTGTAAAACAATGGCTAATGCATAAGAACCTGTGTCCCATTTGTAAGACAACAGGCTTGGCAACATAAGAAACTTGTCCCTTGATTATGAGGGAAACATT CTACCTTAGACAATGAAGAAAACTAGCACAATTGAGCATGAAATTCTTGTTCATTGAAGCTGAATTTTCTGGCATTGTGACCCTTGTCATGCCTTAGCAG AATTTCTTTTATCATTTTTGTTTATTCATCTAAGCCAATGTCTCCTGTTTAAGGTGACAGATGAGGTTATTGGTGTGGATGAAGGACCATTTATTGACTG TACTTGATAAAGTCTTATTTTACATTTTATGAAAATTTTTACATTGTTCATATTGCTGGTATTGGATTTATTGAAGGAAAAGTAGTTTTAATTGTAAGAA ACTTAGGGTTGGAATGTTGGATGTTATCATTAGTCCTAATTTTATTAATATGTATGAATGC
• Tissue: pods
• Gene name: LI_gene_179931;
• Additional information: details;

Expression of Ll_transcript_378350

FPKM

• PAB: 4.5
• PNAB: 3
• PS1: 3.8
• PS2: 2.9
• PS3: 4.8
• PW1: 3.2
• PW2: 5.4
• PW3: 7.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_378350

• Blastp: Probable E3 ubiquitin-protein ligase RHG1A from Arabidopsis with 36.56% of identity
• Blastx: Probable E3 ubiquitin-protein ligase RHG1A from Arabidopsis with 35.09% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (AT5G42940)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019436945.1)
• Pfam: RING-H2 zinc finger domain (PF12678.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;