Ll_transcript_516481

• Id Trinity: TRINITY_DN50857_c0_g2_i12
• Name Transcript: Ll_transcript_516481
• Sequence: GAAAAGAAAAGTGAAACCTTTTCTCTCTCTCTTGAAAAATCTGACAGGATCGTACTCATACACACTCTTAAAATAATTGCAGTTTGTGTTCTCATTGATT GGAAGCTGTAAGAGAGAGAGAAAGAGAAAGGGGTAAAAGCAACAGTAGTAGTAGACTAGTAGAAGAAGAACATAGCATAGCGTGGCCACTAAGTAGTTAA GTATCAACCATAACACCATAAACTACAACAACAACTAGAACAAAGTACATACAATACCATAGCTACTGCAAAAATTTCATCTTTTTCCAACCCCATTTCT TATCTTTTCTGGGTTTTTCTGCATTCTTTGAGATCCCTTCTCTTCTGGCTGTTCATTCATTGCTCCTTCAGATCTGTTTGCTTTTCAAGTTTATTCCTTT ATTTAGCTTACTGAAAAGCAGAAGCTGCATATCTTTTGTTACTTGGTGTTGTTGGGTTCTGAAAGAATAGATATTGTAGCATGAAGTGTTCAGTTCAAAA TTGGAACTTGGGGTGTTGGGGGTTAAGTGGAGTAAAAGCTAATGAGGCATAAAGCTATTGTCTTATGTAGTGATACTGGTTTTGGTTGAGAATTGAAGGG TGGGTATTGTTTAGATTTGAAGGTTTTTTTTTGGTGAATGGGATTAGGGGACATATAACAAGGATTATATTCTTCTGTTGAAAAGGATCGTGGTTGTCAT TTTCCCAAAATTTTGTTGCTTACTTAGTCTACTGAAGAAGATTGCTTTGGAATCATTGATTGTGGTTTCAATTTTGAGACTTTTCTTTTTTTGTTCAAAT GAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCCCTGGAAGGGGAAAAGAGATGTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCTCTTGTTTCA TTGCCGGCAGTTGGAAGCCGTGTGTTTTACTTTCCACAAGGTCATAGTGAACAAGTGAGTAAAATATATGTATTCTGCTCCCATATAAAACACCTTCTGG ACACTGTCTAACTTTTTCTTACTATTGTAACAATAAAATAATGTTAAGAATCTTCAATTTCTGGGAATAAGCATGCTATCTTGGTTCTTGTTTCTGTCCT GGTGCTGCTTCTGATTTGGAGGATGAGGTTATTGTAACACTTTTGTTTAGAAAAATCTGTTTCATCTTTCACTCCGCTGATCCATATAGCCCCGAGATCA GTTGTAGGCCAATGAACTCTAAAGTTTCAAAGTGGCAGTGTCAACCAACAAGGAAGTGGATGCCCATATCCCCAACTATCCAAGCTTACCACCTCAGCTT ATTTGTCAGCTCCATAATCTGACTATGCATGCGGATGCTGAGACTGATGAAGTCTATGCACAGATGACCTTGCAACCTTTGAATCCTCAAGAGCAAAAGG AAGCGTACCTTCCAGCAGAGTTGGGCACTCAGAGTAAACAGCCAACAAACTACTTCTGCAAAACTTTGACGGCCAGTGACACAAGCACTCATGGAGGATT CTCTGTTCCTCGTCGGGCTGCTGAAAAAGTCTTTCCTCCATTGGACTTCTCTCAACAGCCTCCCTGCCAAGAGTTAATTGCAAGGGATTTGCATGGTATT GAATGGAAATTCAGACATATCTTCCGGGGCCAGCCCAAAAGACATCTTCTTACAACTGGATGGAGTGTCTTTGTGAGTGCGAAAAGACTTGTTGCTGGTG ATGCTGTGCTGTTTATCTGGAATGAGAAGAACCAATTGCTTCTTGGCATTCGGCGGGCAAATCGACCACAAACTGTGATGCCTTCATCAGTTTTGTCAAG TGACAGCATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATCTTCTATAACCCACGTGCTTGCCCATCAGAA TTTGTCATACCCTTAGCAAAGTATGTTAAAGCTGTGTATCACACTCGAGTCTCTGTTGGTATGCGCTTCAGGATGCTATTTGAAACAGAGGAGTCAAGTG TGAGGCGATACATGGGAACAATAACTGGCATTAGTGACATGGATCCTGTTCGGTGGCCGAATTCATATTGGCGCTCAGTGAAGGTTGGCTGGGATGAATC CACTGCAGGAGATAGGCAACCTAGAGTGTCTCTTTGGGAAATTGAGCCATTAACAACATTTCCCATGTATCCATCGCCATTCCCGCTTCGGCTTAAACGA CCATGGCCTCCGGGGCTGCCTTCATTTCATGGCATGAAGGATGAAGATTTTGGAATGAATTCTCCGCTGCTGTGGCTTCGAGACCCTGATAGAGGGCTTC AGTCTATTAACTTTCAGGGGATGGGGGTTAATCCTTGGATGCAGCAAAGGTTTGATCCGTCCATGCTGAACATGCAAACAGATATGTATCAAGCTGTGTC TGCCACTGCTCTTCCGGATATGAGGACTTTAGATCCTTCCAAACAGCATTCTTCTTCCTTAGTTCAATTTCAGCAACCACAGAACTTCCCGAACAGGACT GCTGCTTTAATGCAGGCCCAGATGTTGCAGCAGTCACAGTCGCAGCAGGCTTTTCAGAATAATCAAGAGAATCAGCAGTCATCTCAATCTCAGGCACAAA CTCAGATGCAGCAGCTGCAGCACCAACACTCATTCAATAGTCAGCATCAGCTTCATCACAACCAACAACCACAACAAATGCAGCAGCAACAACAGCAGCA ACCACAACAAATGGTAGATAATCAGCAGATTTCTAATGCAGTCTCTACAATGTCTCAGTTTATTTCGGCACCTCAATCTCAATCACCACTGATGCAAGCT ATCTCTTCACTGTCCCAACAACAAACGTTTTCTGATTCTAGTGCGAACCCTACCACTATTGTTTCTCCCCTGCACAATATCTTGGGTTCGTTTGCCCTGG ATGAAAATTCCCACCTTCTGAACCTTCCTAGAACAAGCTCTTGGATTCCGGTTCAGACTTCAACTGCATGGCCACCTGCCAAGCGTGTTGCAGTGGATTC TCTCCTTTCTTCCGGGGCATCTCAATGTGCTATGCTACAGGCAGATCAGTTAGGGCAGCCACAGAGTACCATGTCAAAAAATGCTATTACATTACCCCCT TTTCCTGGTAGAGAGTGCTCAATAGATCAAGAAGGGAACAATGATCCTCAAAATAATCTTTTATTTGGTGTTAATATAGAGCCCTCATCACTTCTAGTTC AAAATGGGATGGCAGGCCTTAAGGGAGTCGTCGGCAACAGTGACTCCCCAGCCATGCCATTTCAGTCTTCTAATTTCATGAATAACACAGACATTGACTC TTCATTGAATCATGGAATGACACGTAGCATTGGTGATTCAGGCTTCCTGCATACCCAAGAAAATGCAGGGCAAGAAAATTCACCAAACAAGACCTTTGTC AAGGTTTATAAGTCAGGGTCCTTCGGAAGATCATTAGATATCACTAAATTCAGCAGCTACCACGAACTGCGTAGTGAGCTTGCTCGAATGTTTGGTCTTG AAGGTGAGCTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGACGTTCTTCTCCTTGGTGATGGCCCTTGGCCGGAGTT CGTAAATAGTGTGTGGTGTATCAAGATACTTTCGCCTCAAGAAGTGCAGCAGATGGGCAACACCGGCCTTGAGCTTCTGAACTCTGTTCCAATTCAAAGG CTCTCTAATGGCATCTATGATGACTACATGAGCCGTCAGGAC
• Tissue: pods
• Gene name: LI_gene_180514;
• Additional information: details;

Expression of Ll_transcript_516481

FPKM

• PAB: 1.1
• PNAB: 6.5
• PS1: 0
• PS2: 0.6
• PS3: 0.2
• PW1: 14.1
• PW2: 7.3
• PW3: 3.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_516481

• Blastp: Auxin response factor 6 from Oryza sativa with 63.34% of identity
• Blastx: Auxin response factor 6 from Arabidopsis with 85.18% of identity
• Eggnog: auxin response factor(ENOG410YA3R)
• Kegg: Link to kegg annotations (4328406)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419302.1)
• Pfam: B3 DNA binding domain (PF02362.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;