| Id Trinity | TRINITY_DN50872_c0_g1_i26 |
|---|---|
| Name Transcript | Ll_transcript_516381 |
| Sequence | TTTCCATCCACTTCCTTCATCTCGTACGCTCTCTCCCTACTCTCACTTACTTTTTTTTACGACCTCAACTTCATACGCCGAGATAAGGCTGCATACATCT ATCTTTTCTCGACCGAGAGCCTCATGCACTTGGTCACCTATACATATATTATGAACTCTCCTGTGTGGTTTCTTTTGTAAAGTGGAAATGATCATGGTCA TGATAATGATTGTGATCACAATTATTAGCCTTTTCAGCGTCGAGCATTGTGAAGAAAAGGAGTGAGAAGTTTGATTCTGTTTTTTTTCTGGATTTCACTG TATACAACAAAAGTTTCACCCACTATGGAAGCCGAAAAATCTAATGTTTCAAAGGCGGAAGAACTAAAGCTACTAGCCAATGAAGCATTCAGTGCCCGAA AGTATTCTCAAGCTATTGATTTATATACACAAGCAATTGAGCTAAGAAGTCAAAATGCAGTTTACTGGGCTAACCGTGCGTTTGCCCATATCCGGCTAGA AGAATATGGTAGTGCAATAGAAGATGCTACAGAGGCTATTGAAGTTGATCCTAAGTATTCAAAGGGTTATTATAGGCGAGGTGCTGCTCATCTAGGGCTG GGAAAATTCAAGGAAGCACTGAAAGATTTTCAACAGGTTAAGAAAATGTGTCCAAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAAGCAG TTATGAAACTTAAGTTTGAAGAAGCAATTGCTGCTCCGGAGGCTGAAAGGCATTCAATAGCTGAATCCATAGATTACAAGTCTATAGGAAAGAGCCGCAA TTCTTCGGTGCCCACCAAAATGGCCATAGCGGCAGTGACAGTAGCAGTTATGGCAGTGGTGGTGATGTTGTTCAGGTCATCAATGACCATAATTGTTGCT GCAATTGTGGTTGGTTTGCTGTTGCTCCTTGGGGCATTTAGGTGGAGTGGCCACAATACTGGTATATTTAGGAGTCGTTTACATGACCAAGTCTTAGCTT AAATTTAATCAAGATATAAAACTAACTATTCAGAGGATAAACTTTAGAAAACTGAGAATTGATATAATAAATGGAATCATTATCGATAATACTTGAAAAC ATATTGCTTTGTTCTTCATAATGGAACATAATTCTTCATATTGACTGTATTTTTTGAATAAATTAATCTTGTTGTACTCAACTGATGGAATGAAAAGCCA TATCATGTTTTCAAGGAATATTTCATTAGAATGTGATTATTACTCCTGGGCTCATCCATATGAGCATTGCTGTTAGATTTCATTTGGTATGTTTTCCAAC AAATCATGGAAACAACTTCTTTACTTGCAAAAGTAAGGCTGCATACATGTACCCTATTCAGGCCCTACTAAGTGGGAGCCTCATGCATTGTGCCGCCCTT TATGTTTTATGACAAAGATGATATATGCTTTGCGTTTATTACTTTATTTGTAAGAGTATATTTTATCTAAAACAGTGAAAGGGTAAGTATAAGACGGGGG ATAAGTCACCCTCCTAAACAAACCAATAAAGAACTATTTATATGTTGTATCTATTTTCCCCCTATTTTCCTATATGTTGTATTTACTGTTGAGGTGTTCG ATTGTTTACCTGGGTTGGCATCTAAATATTGTTGAACGTGTATTTTATAATTGTATTCAGATTTGGTCGAGATAATGTAATTTCCCTGATCTTCAACCTT ACTTTTATAGGATTATTAATTTCAAGGACTTCAAGGAACATATTTACTGATAACCATCCCTCTTAACAGCTATGCTTGGTCTTTTCTGTTAGTTATTGTT AGTCCTTATTTTTTATTGGGTTGTAAAATTTATACCCCCTTAATTTTTCCAATTTATATGTTACCATTAAACTAATTTCAAGTTCTATTGTAACATTTGA TTCATTAGCTTGAAAATATTCGGTGCTCCATTTTTTTTGTTAGATGTCGAGTCACAATACTCAGGAGCAAGAATAGAAGGGGATATCATTACTTTAGATT TTGTGAAGAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_180642; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_516381
| Blastp | Serine/threonine-protein phosphatase 5 from Lycopersicon with 73.08% of identity |
|---|---|
| Blastx | Serine/threonine-protein phosphatase 5 from Lycopersicon with 77.38% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (543849) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019426308.1) |
| Pfam | Tetratricopeptide repeat (PF13432.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |