Ll_transcript_388962

• Id Trinity: TRINITY_DN50918_c2_g1_i9
• Name Transcript: Ll_transcript_388962
• Sequence: ATTATAGAAAAAATATTTAACCTCAAATAGTCAAATTTATGCTATTCATGGACCATTTATTTTCTTCCTTACAATTGATAATGATAAAAAATCTCCTTGT TTACTTTTGCTTCATATTTTTTTAATTTTTATATTCTGCATTCTATCTGAATCTTCCCACTTGCATTTTCTTCTTCTCTGTGTGTGTTTTTTTTGTGAAA TGCTGAGAGACATTGATTTTGATCAAAGGGTCATTAGTTGTCTGAGAACAAGGTGAGAAAACACAAAAAAAAAAAAAACGTTTTTTTTTATTTCTTTGGT TTCTGGTATCAACACAATAAAAACCCATCCTTTTTGCTCTTGTGTGTTGAAACTTACACAAAGGAATCATACCCAGATGAATATCAACTCACAACATTCC ATTCCACATCATTCTTATTTTTTCTGATGCATCTATCATTATTGGATTGTGTTTTGGTCTGTCTTATCCTTTGTTGTTCTTGATGTTGTCTTTTTAGCTG AAAAGGAAAGAAGGAATGGAATCAGGTAGCGTTGATAATAGTCTATCTTCATTGATCATGATGGATGAAGCTGAGAATCCACATCAGTTTTCTTCAATCA CTACCAAGCTTCATAGTAATGGACCCACTGCTACTAGTGTCCACGAGCTTCTTGAATGCCCCGTTTGCACCAATTCAATGTACCCTCCAATCCATCAGGT ATGTGCTTTTTTCAATTTTACTTCATGGGTTGGTTTCACCAATTTTGTTCTTAATTTATGTTGACCTGTTGGTACCTTGTTTCTTTGTTTTTTAAAGTAT GATGATTGCTTTTGAAGTGTGCAATTGAGTTTAGGAATTATGGGTTGTGTTTTGTTCCATGGATCTTATGTTTGCTGGCATTTTAGTTTGAATAATTTGG GCAAGTTTGAATATTATAGGGGAAATAAGGGTCTTGGACGTTTCGGGGTTCCTTCTCATCTTTTTTCATGTTTACATAAGGTAAAGATGTAGTTATGTAA TCATGGATGAATTGGATGGAGCGAAGTTTGAGTTGAGCTCTTTTTCTTGTAAATCTAGTCCTTTTCTATTGGCACTCTGCTATAAGAATGCTTTGTGCCA TTAGCTTCATTCAATTTTAGAGCCTCATTTTATTCAAGTTAACTCATGTTTAGATTGCTTTGCAAAGTAAGCAGTGTGTCGGTGTAAATGGTTGCTCCAT GGTGCTTCCAACAATTTTCATTTGTGCTTCTTTTGGTGGTTTTGGTATGAGTGTGAAAAATAAGATACAATATGGTTTTGTTCACCCAGGGTGTGGTGCT CTACTTGGATAACATCATTCTGTTGGATGAGACAACTTAAATGGACATAGTTATTACCCCATCTTCTTCATACCAGTGTGTGGTAGGGCAAAGGTATGGT GTGAGTAGTGACTCTGTAAACCCCTTCTCTATCTATCCAAGGGTCATGCGAAGGCCTTCAGTGTCCCTTCTGGTCAAGAATTAGGGCCTCACGAGTCACG ATGAATGTCAATTTTTTTATCTCATGTCTTTCTTGATTCATGGTTTGGTATTCTGGTTCATAGGCATAGAGGAACCACACCAATCCATCCCAAACTTGGT GCTCTACTGCAGTGACAATATTGTACGGGATGCCTTGCAGAAATGTAGCTCATAGAAGGCAATTTTTTTTACATTGCAGGACCTTTGCAGGATGCAATTC AGAATCAAGGAAAATTTTAGTTCAAAGGCTGTATAACTTATGATTATTCCCTAGAAATTTTAGGGCTTCAATCAACCTCTGTAGATCAACCAGGAACTTA TTTACGTTATCATGGCAATGGATATTCAGTCCATGGTTATGAGAGGAATCTATTGAGTGGTATTCTAAATAGGATGGTTTAGTATATAAGGATATTAAAA AACCATAAAGGACTAAAAGAAAAGCATGTCACGTGTAGCCATGGTAGCTAAGTACGCTGTCCAGGGAAGGACGGATAAGGCACAAATCTGACATGGGGAT ACGACAAAAGAAATATAGAATGTTAAAGAATATGGTTAGGAGTTCAACCAAATCTGATGATTTATTTAATGTCAGGCTTAACTTGTGCTTAAGTTTATTT CACAAATGATTACATCATGATTTATGACAGATTTTATCTTTATTTTTGTGAGGAACATTTTAGATATCAAGTTTCTTGTCCTCATGGGAATACCGTGCCA CAATGGACATACCCTTTGTTCAACTTGTAAGACAAGGGTAAACAACCGGTGCCCAACTTGTAGACAGGAACTCGGTGATATAAGGTGTCTGGCATTGGAA AAGATAGCAGAATCACTCGAACTACCTTGCAGATACAACTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAACATGAGTCTATTTGCA ACTTCAGACCTTACAACTGCCCCTACACTGGGTCAGACTGCTCTGTCGTTGGGGATATTCCATACCTTGTTACACATTTAAGGGATGACCACAGGGTTGA TATGCATTCTGGATGCACTTTTAATCATCGCTATGTCAAGTCTAATGCCATGGAAGTAGAAAATGCCACATGGATGCTAACTGTCTTCCACTGTTTTGGT CAGTATTTTTGTCTCCATTTTGAAGCCTTCCAGCTTGGTACGGCTCCGGTTTACATGGCATTCCTTCGTTTCATGGGCAATGAAAGAGAGGCGCGAACCT ACGGCTACAGCTTGGAAGTGGGAGGAAATGGGCGTAAACTAAACTATGAAGGCAGTCCAAGAAGCATAAGAGATAGCCATAAGAAAGTTAGAGACAGTCA TGATGGTCTCATTGTATATCGTAACATGGCACTTTTCTTC
• Tissue: pods
• Gene name: LI_gene_180989;
• Additional information: details;

Expression of Ll_transcript_388962

FPKM

• PAB: 0.3
• PNAB: 1.3
• PS1: 0.8
• PS2: 0.2
• PS3: 0.3
• PW1: 1.4
• PW2: 1.1
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_388962

• Blastp: E3 ubiquitin-protein ligase SINAT3 from Arabidopsis with 86.05% of identity
• Blastx: E3 ubiquitin-protein ligase SINAT3 from Arabidopsis with 86.05% of identity
• Eggnog: e3 ubiquitin-protein ligase(ENOG410XVP0)
• Kegg: Link to kegg annotations (AT3G61790)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019456873.1)
• Pfam: Seven in absentia protein family (PF03145.15)
• Rfam: 5S_rRNA (RF00001)
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;