| Id Trinity | TRINITY_DN50933_c3_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_388540 |
| Sequence | GTCAAGTTAAAGCAGTTCTTGAGGAGGGAGGACATTTCTCTGGCATATATAGGAAGGTTCAACTAAAGCCACTTAAATGGGTCAAAGTTGCAAAAAACAA TGGAGAAATTGAAGAACGACCTGTTGAAGCTCTTATGGTTCTTAAGTATGGTGGTGTTCTTACACATGCTGGCAGAAAGCAGGCTGAAGAACTTGGAAGA TATTTCCGAAATAAGATATATCCAGGAGTGACTCTTGATATAGTGTATAACGCCATGATCGCCACCAACACTGTAACGCTTCAGTCATCATCTCCGCCAT TCTTTCCTTCCCCTGCCTCGCCGCTTCAGGCGGTGTCCACTCCTCTGGTGCTTCCTCTTCCGTCGATGAAATTGACAGAGAAGAATTATTTGGTGTGGCG ACTCTTTATGCTCGCAACCCTAACTTCGAAACGAGCGAATCAATTCGTGTTAAGGACTGAAATTCCTCATAGATTTATGAGTGAGGATGATGGGCTCAAA AATCGGGTGAATCCAGCATATCTTCGTTGGGAAGAGCTTGATCAAACCGTATTTTCATGGATTCTGAATTCTCTCTCTGAAGGTCTTCAACCATGTGCTG TTGGTTGTGTGCACTCATGGCAACTTTGGGAGGAACTTGACTCTTTCTACAACTCCCAAACCAAAGCACGTAGTCGGCAATTGCGATCACAACTTCGTTC TATTTCTCAAGGTTCAAGCTCTATCTCTGATTTCTTTACGAAAATCAAGGGACTTGTGGATGCATTGATCTCCATCGGCACTCCTATTTCAACATCGGAA CACATTGATTACATTCTTGATGGGTTGAATGAGGAGTATCAACCAGTAATCACATCTATTGAAAGTCAAATTAATCTTCCATCCATTCACAAGCTTGAGT CATTCTTGCTAAATTTTGAGTCTCGACTTGAGGAGAAGAAGAATAAAGTATTGTCTAATGCTCTCTCTACCAATGTAGCCATAGGTTCTGCTTCACCTCC TCCGTCAAAGCCAATACATTCATATTCGCAACAAAATCCTCTCACATCGCAAGTGGTGCTATCACTTTACTCTTCATGCCCTAAATCGCAAGTTCAAGGG TATTATGGTGGATATGGTGGCTCTGGAGGCTATCGTGTCAACCGTGGAGGTCGTCGTGGAGGTCACAATAGAAGTGGAAGAGGTTCAGGCCGTTCTTCGC CTGTGTTCTGTGTCTACTGCAACCGCCATGGACATGAAGTTAACTCTTGCTACTATGCTCCGCAAAATTTTGGTGTATCACTACCTCCTTTTTCGTATAA TATGCCACGTCAGGAACAAAATTATTTTCGGAGTTTTAATGGGCCACAACTACGCTATCCAGTCCACTTCTTTCCAGAATTTACTGACGACTTCTATTTG GGGTATTCGCCACCCTCACATCATTGTGGGCCCTCTTATTACCCATCACAACACTTTAATGAAGACTCTTTACATAGGCCTGACCCATCCTATCCTTCAA GACAACCTTTTCAACCTTATGCTATGACAAATTGTATTCTTAACAAAGCAATTCCTTCTACGAAGAACTTTAGAAATGTCACATGGTACCCTAATTCTGG GGCGACCAACCATTTGACAATGGATCCAGCCTTGCTGCATGAACCTGTGGAGTCTTTTGGTTATGACCAGATATTCATGGGTAATGGCATTGGTATCTCT ATTCAGTCTATTAGTAATTCTCATTTCACTTCTTCTCTTAACTCAAATATTTCTTTTCACTTAAATAATCTTCTTCTTGTTCCTTCTATCACTAAGAATC TAATTCGTGTCACAGTTTGCCAAAGATAATTCCTGTTATTTCGAATTTCATCCTAATGTTTGTCTTGTGAAATCACAGGAAATTAATGAGATTTTACTCC AAGGGTCTCTCACCAAGGAAGGGCTCTATGCTTTCCATGGTCTTCTTCGCAATTCTTTATCTTATCGTGCATTAGCTTTTACGATTTGTCAAACTTCTAG TTGTAATCACTTACCAATATCTAGTCTGGTATGTCTAATAAGTCTAGTTTTCCTATTTCTATTTTTTTGGCACTATAGATTGGGCCATCCTCATAAGGCC CATGTTAAACATGTTTTAGCTGGGTGTAAAATTTCACATGTTAATAAAATTGTGTTTGATTTCTGTTCATCTTGTTGAATTGACAAATCTCATAGACTTC ATTCTCCTACCTCCTCTATTGTTTATAATTGTCCTTTTGACTTAGTCTATGTAGACCTATGGGGCCCTGCACCTATTTACTCAGGCACATGATTTTGTTA CTATTTTTCTATTGTGGATACTTTTACCAAGCATACATGGATTTTTCTGCTTAAAGAGAAATCTGTGACACTATCCCACTTTCAGTATTTTATGAAATAT GTTAACACTCAATTTAATCACACAATTAGAGTAGTTTGAAGTGATTAAGGGGTCAATCCAGGCCCTTTAGCAATTTTCTCAAAACCGTGGGATTGTACAT AGGATTTCATGTCCTCATACACATCACCAACATGATATTGTAGAGAGGAACCATTCGCATATAGTTGAAATTGGACTAACCTTGTTGGCCCATTGTCATC TTCCCATGACTTATTGGGATCATGCCTTTACAATAACTGTTTTTCTCATTAACAGTCTTCCTTTAGTCACACCCAATCTTTAATCTTCTCCTCAACTCCC TTGTTACCCTGATGATGTTTCTTTTCATTCCTCCTTATTACCTCCCTTTCAAAACACTACGTCTCATTCTTTGCCTTCTAGCTCATCCTCACCATTAGCT CCTTGTCTTGTACCTATTGTTTTTTCTCACCCTATGCAAACAAGGTCTAAGTTAGGAATCTACAAGACCATATACCCCAGTGTTCATCTTACTCAATGCG AGTCCGTGAGTGCCAAAGCTGCCTTAGCCAATACTGTATGGTAGTAGGCCATGCAAGCTAAATATGATGCTCTTATGACCTTAGGCACTTGGTTTGTAAT GCCTCTACCTCCTCATAAATAGGCAATTGGGTGTAAATGGGTTTTTAGAAATAAGTGCAAAGCTAGACTGGTTGCAAAGGGGTTTCATCAAAAACATGGA GTGGATTACAATAAAACTCTCTCCAATTGTTACTCATGTCACTATTAGAGTTTTACTCTCTCTTGTTGTTTCTCATCATTGGATGATTGAACAACTTGAC ATCAATAATGCATTTTTAAATGGCTTTCTTGATGAAGAGGTCTATATGACTCAACCATTGGGTTTTCATCAACATGATAAAACTTTGATTTGTAAGCTAC ATAAAGTAATCTATGGGCTCAAGCAAGCTCCAAGACAATGGTTTGAAAGGTTAAAGGGTTCTTTACTCAAACTTGGGCTTCAAGTCAACAAATGTGACAA CCCACTTTTCATTCATACCTCTTTGCCCTATAAAATTTATGTCCTAGTCTATGTTGATGACATAATTGTCACAGAGTCATCTTCTTCACATGTTCAAAAG CTTATCAAGGATCTGAATTCCACTTTTGCTCTTGAAAAGTTGGGTCCTCTTGACTATTCCCTTGGCATAGAGGTCAAACACAAAAAGGATGGTACTTTGT TTCTATCTCAGTCCAAGTATATCAGAGATCTTCTAGAAAAAGCACATCTCACTTCAACTAAAGCTCTTCCAACTCCTATGGCTAGAACTGCAAACTTACA AAGCATGGAATTGATTTCTTTGAAGATCCTATCTTTTATAGGTATATTTTGGTGTTCTAATACCTTGTAAGAAATGGAAATGAAAAGTGAGAAATGGGAA CACGAGAGAGTGAGAGAAGAGGCAGAGAATTTGAGAGACAAAGTAGAAGAGAAAACAGAATTCTTATTAATGAAAGTTAGTTTACAAAGAGAAGAGCTAG GCTCTTTATATAGAGGTACATTTAAGTGTGCTAGTTTGAAGTTAACCTTCTAACTAATCTAACAAACTAACAATCTGTTGCTGAAACAGCTAACTGAATA ACAGAAACCACAATATTGTAATATTGCACAGAATAACTTTACGAGCTCTATGTATTGGTTTTTCCTAAGACATTTGGTCTTCATACTAGAGTACTATGAA TATGTGTTTTATAAAACTTTCTTCTTTCCTGCCCTGCTAACCCAAAAGTTCTGTTAGCATGCCTTGAAAGTTGGGAGATAAATTCAGTTTTATAGTTATG CATTTAACATTTCAGCATATAAAACAGAATATTCATTTTCTAATATGAATGGTTTCTTTAAGAACAGTTTATACAATTTTTCCAGTTTAGGTCTTGTGTT AAGGTATTATGGCTGACTGAGACCTCTTATTTCCTATTTTATTAGAGTTTTATCTTGGCAGTTATTTTCAATTTATTTCCTGATTATTCTTATTTTACGT GTGGGTTGAGCTTGTACTCGCAAAGATGGCCAGTGACCTCCTTTCCAGATTAATCTAATCTATGTGCTTTGGTTCCACCACTCGACAGGCTGTTTGGCCA TATATCCACTAAGACTTATTCTGTTTGGGTCTTCTGAGGTTTGGATGTGTGGTCCCCTTGATATGCTGTAGTTTTACTAGCAAAGAGCTGAATAGGTGAA ATAGGGGAGGGCAAGTTACAGGCTGTTCCAGCCAGCTAACAGCAAAGGAGGGTCTAAAAGGGGTGAGGAACAAGCAAGGGGGTCGCCAAAATATTCTGGT GGCTGGAAATAGTTGCCAGAAGCAAATTAGTGCCAAGATATGTCATGGAGAATGGAACCACATTGATACCATGTTGAAAAAGAGAGACGTGATGGAATTG CCTGACTGATTGTGCTTAGGATATAATATTTATATGTAGGACCCTATTATTCCCAAATCCCAATGCATCATTTATTGCATGATGCATTTCCAACATTAGG AATTAGCTTGTACTAGTTGTACTACACTGCACTTGACCTAACTACTAGGATAATTAGGATCATTGTGCTAGTAATTTGTTGCACATCATCGTACATGAGA ATATTGCTAAGAGTTTCGTTATTATGTTGTTCAAGTAGGAGAAGGTACAGGGTTGCTTCGCCTCCATAGTACATACCGCCATGATCTTAAGATTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_181123; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388540
| Blastp | Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase VIP1 from Arabidopsis with 88.16% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 39.38% of identity |
| Eggnog | Diphosphoinositol pentakisphosphate kinase(ENOG410XNSN) |
| Kegg | Link to kegg annotations (AT3G01310) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019447442.1) |
| Pfam | Histidine phosphatase superfamily (branch 2) (PF00328.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |