Id Trinity | TRINITY_DN50981_c0_g1_i1 |
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Name Transcript | Ll_transcript_388042 |
Sequence | AAAAGACATTAGTTAGATGGAAAACGATGTTTACTGAACTCTATGATCCATTTTCAACAATAGAGTAGTACGGATTCTTCTTTCTATAATTATTTTGTAA AAACAAACAAGGCAACTTAATTTACTATCCAGATGCAACAAGTTCATGCATATGAAGAAGGTAGCGTGTTCTGTAGCAGAGGCTCACGCTCTGTCTCTGT CTCTGGTGCAAAAATGCAGCACTGCAACCTCACTGAGAGAGGCGCGTCAAATCCACGCCCTCATATTAACATCCACCGTCTTCGTCTCCCATTCTCCTTT TGTGTACAACAACATCATCACCATGTACGCACGTTGTGGTTCATTCAGAGACTCTCACCACGTGTTCGACAAAATGCCTCACAGAACTCTTGTTTCTTAT AATGCCCTTATTGCATCTTATTCTCGAGTATCACACTATGCCATTTCCGCCCTCAAACTTTTTACCCAGATGGAAACTAGGGGCATCAGACCCAGCAGCA TTACTCTTACAAGCTTGTTGCAAGCATCTTCGCTGCTTCAAGATTGGTGTGTTGGGTCTTCGCTTCATGCTCAGGGCCTCAAGTTTGGTTTTTTAAATGA AATTTGTGTCCTAACCTCTTTGCTTAATATGTACTCGAATTGTGGGGATTTGGGTTCTGCTCTAATGGTTTTTGAGGATATGGCTTATGCCAATAGAGAC TATGTTGCTTGGAATTCTTTGATTGTAGGATATTTGAAGAACAATAAGGTCAAGGAAGGTCTTGATCTCTTTAGTTCGATGGTGTGGTTTGGTTTTGCTC CTACCCAATTCACATATTGTATGGTTTTAAATGCATGTAGTCGTCTGAAGGATTACCATTTTGGGAGGTTGATTCATGCCCAAATGATTGTTAGGAATGT GGTGCCCGATTTGCATCTGAAAAATGCTTTGCTTGATATGTACTGCAATAATGGCAATACACAAACAGCGTATAGGGTTTTTAGTGGAATGGAAAACCCG GATTTAGTTTCTTGGAATTCAATGATTGCTGGCTATTTTGAGAATGGGGAGGGAAAGATGGCTATGGGTTTGTTTGTCCAGTTGCAGGAGTTGTGCTTTC CTAAACCAGATGAGTATACTTATGCTGGCATTATATCTGCAACTGGTTCATTCTCATCTTCCTATTGGGGAAGACCCCTTCATGCTCAAGTTATTAAAGC AGGATTGGAAATAAGTGTGTTTGTAGGAAGCACTCTAGTGTCTATGTATTTTAAAAATAGTGAAACTGAAGCCGCTCAGAGAGTATTTTATTCAATCCCA GGGAAGGATGTCGTTATCTGGACTGAAATGATCACTGGTTATGCTAAAATGACGGATGAGATGGGTGCAATTAGATGCTTCGTTGAAATGTTTCATGAAG CCCATGACATCGATGACTATGTTCTTAGTGCAGTTTTAAGTGCATGTGCTGACCTTGCAATGTTAAGACAAGGTGAAATAATTCATTGTTATGCTGTTAA ATTGGGTTATGATATTGAAATGTCTGTTTCTGGGAGTCTAATTGATATGTATGCCAAAAATGGTAGCGTTGAAGCTGCATATCTGGTATTTTCTCAAGTT CCAGACCCTGATTTGATGTGTTGGAACTCAATGCTTGGAGGGTATAGTCGGCATGGAATGGCGGAGGAGGCGTTGAAGCTTTTTCAGGAGATTCTTGAAA AGGGTTTGGTTCCAAATGAAGTGACATTCTTGTCTCTGTTGTCTGCATGCACCCACAGCAGGTTGGTTGAGCAAGGAAAATTTATCTGGAATTACATGAA CATCATTGGTTTAGTTCCTGGTCCTAAGCACTACTCTTGCATGGTAACTTTGTTAAGTCGGGCAGCATTACTGGAAGAGGCAGAAGAACTTATCACTAAA TCACCTACTGAAGATAATGTAGAACTATGGAGAACTTTACTGAGTGCATGTGTTATCAATAAAAATTTGAAAGTGGGAGCTCATGCAGCTGAGGAAGTTT TAAGATTGGATGCAGATGATGGTCCAACACTTGTCTTGCTTTCTAATCTTTATGCTACTGCAGGGAGATGGGATGAAGTTGCAGAAATAAGAAGGAATAT GAGGGGATTGATGGTGGAGAAAGATCCAGGGTTAAGTTGGATTGAGGCCAAAAAAGACATTCATGTGTTCTCTTCTGGAGATTTATCACACCCTATGGCT AATGAGGTGCAGGCTGAACTGCATAGGCTAAAAAGAAATATGATTAGAACTAAAAGTGATGGCAGTGAGATACAAAAGGCATGCTACTTAAGTTTTACAG GCTAAGCTTATCAGAGTATGTCCAAGATGTGGAATTAAATTAAAATCAAGGTCACTTGAACTATACAAATCCTGGATATGTCTGAGGTTAAGAGTGTGTA TATATATCATCTGCAAAGTCATTAGGTGGAAACCTCGTGTATTGTTCGTCCTTTTATAAACTTTATACTGGGTCTGAAGATTTAGAGGAAATTCTGCATA AATTTGCAGAATTCAAGTTAACAATCACATTTGATTTATGGATAGGTTTTTAAAAAATAATTATGTATTTAGCTAAGTGCTCCCACCAGCGTGTTTCCAG CGCTGAAGGCTTCAATGCGGAGAGATTGACATGCTTTATTACATGACTCAATCTCATGTTTTTTTTTCTTAATGAGGATTGTTTATCCTCTATATTTGTA GTTCTCTCTTCTACCTTGATAACTTTCATTTTTCTATATATAGAGAAAATGACATTTATGAGGGCTAACAACCATACAGTACTCTTTGGTGACCGGCGAA ATATCTAAAGCTCATAGACCCTGTGTCACTGAGGTCATATGCCCAGACTAAATGATCCTGTATATACTTGTTACTGGAAACAAGTATAAACATTCACGAA GAGGACACTGCTGGACGGGGAGCCGCCTTTGAGAGTCAAGCCGTCCGTCAACGGGGGCCACATTCCCATCCCGCAGCCGTGCTCCAGGGACGAAATCCGG CGGTCTCACTTCTCAGCTTCTCCGACCACCGTATTCCAGCTTAAGAAAACCCAGGAAGCATTGTTATTAGTCTTTATTCTGAAGTTGGAAGTGGAGAGGG ATGATTGCTTCTTTACTAGTTGTGGTTTGGGATATGTGAGTGTGCTGGTTAGTGAGGGTATTGGAATTGGGTGAAGAAGAAGATGATGTTCTTCTCCTTT GTTACTTGTCTTATTGGCTGAATGATTTATCTCTCTCTTTTAGTATAGAAGCTGCTCAGATTAGGATAAGGGTATCTCTAAGTGCGTTTAGGGCTGCTGA TGGTGTTTTTAAAATTCAGATAAAGTTGCTCCACTTAGTTAGTCCTAAGTGAGGCCTTTTATAGCCTCACTTAGATTTAAGGTTAGGCATAAGGGATAGT TTTAGGTCCTGTGAGTGTGTTTAATTGCAATTCAGTGTCTGAATTGCTGAATTTGTTAATTCAGTTTTTTGTTGCTCAACCTTTTCATTTTCCTCTATGA GCTTC BLAST |
Tissue | pods |
Gene name | LI_gene_181463; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388042
Blastp | Pentatricopeptide repeat-containing protein At3g50420 from Arabidopsis with 51.85% of identity |
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Blastx | Pentatricopeptide repeat-containing protein At3g50420 from Arabidopsis with 51.91% of identity |
Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
Kegg | Link to kegg annotations (AT3G50420) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_020216205.1) |
Pfam | PPR repeat (PF01535.19) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |